Os01g0846500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : PAP/25A core domain containing protein.
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Os01g0846500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : PAP/25A core domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 115.49 | 0.505 | 7.73 | -2.76 | 0.892 | -0.367 | -0.656 | -5.32 | -0.333 | 23.1 | 9.542 | 2851 | -- | -- |
| 137.61 | 0.546 | 7.71 | -2.82 | 0.944 | -0.545 | -0.73 | -- | -0.428 | 23.8 | 1.48 | 10009 | -- | -- |
| 116 | 0.502 | 7.73 | -2.74 | 0.916 | -0.354 | -- | -5.31 | -0.333 | 23.2 | 9.189 | 2914 | -- | -- |
| 128.25 | 0.527 | 7.67 | -2.94 | 0.952 | -0.816 | -- | -- | -0.508 | 22.6 | 1.195 | 14396 | -- | -- |
| 165.52 | 0.602 | 7.62 | -2.99 | -- | 0.661 | -- | -0.286 | -0.306 | -- | 9.401 | 2733 | -- | -- |
| 153.19 | 0.58 | 7.63 | -2.94 | 0.95 | -- | -0.415 | -- | -0.256 | 23.4 | -- | -- | -- | -- |
| 153.93 | 0.581 | 7.63 | -2.93 | 0.952 | -- | -- | -- | -0.255 | 23.4 | -- | -- | -- | -- |
| 159.49 | 0.588 | 7.68 | -3.17 | -- | -1.37 | -- | -- | -0.414 | -- | 1.38 | 15512 | -- | -- |
| 351.75 | 0.874 | 7.61 | -- | 0.974 | -0.896 | -- | -- | -0.125 | 22.6 | 19.9 | 8549 | -- | -- |
| 210.69 | 0.678 | 7.61 | -2.9 | -- | -- | -- | -- | -0.245 | -- | -- | -- | -- | -- |
| 379.83 | 0.912 | 7.56 | -- | 0.922 | -- | -- | -- | 0.0712 | 23.2 | -- | -- | -- | -- |
| 383.48 | 0.912 | 7.55 | -- | -- | -1.42 | -- | -- | -0.0957 | -- | 49.83 | 8230 | -- | -- |
| 432.97 | 0.971 | 7.53 | -- | -- | -- | -- | -- | 0.0768 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 112.84 | radiation | 1.0 | 4320 | > th | dose dependent | rect. | 17 | 13 |
| 2 | 114.02 | radiation | 20.0 | 4320 | < th | dose dependent | rect. | 17 | 13 |
| 6 | 114.32 | radiation | 1.0 | 4320 | > th | dose dependent | rect. | 17 | 2 |
| 16 | 114.39 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 17 | 114.42 | radiation | 10.0 | 4320 | < th | dose independent | rect. | 16 | 15 |
| 20 | 114.54 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 24 | 114.56 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 9 |
| 32 | 114.92 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 33 | 114.93 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 18 | 11 |
| 45 | 115.11 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 23 | 3 |
| 46 | 115.17 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 22 | 3 |
| 50 | 115.26 | radiation | 20.0 | 14400 | < th | dose dependent | rect. | 18 | 3 |
| 53 | 115.28 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 71 | 115.34 | radiation | 1.0 | 4320 | > th | dose dependent | rect. | 16 | 15 |
| 83 | 115.42 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 18 | 17 |
| 98 | 115.47 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 18 | 9 |
| 113 | 115.53 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 5 |
| 128 | 115.57 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 5 |
| 135 | 115.57 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 5 |
| 139 | 115.60 | radiation | 1.0 | 14400 | < th | dose dependent | sin | 11 | NA |
| 141 | 115.61 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 17 | 7 |
| 172 | 115.68 | radiation | 20.0 | 4320 | < th | dose dependent | rect. | 16 | 15 |
| 235 | 115.78 | radiation | 1.0 | 4320 | > th | dose dependent | rect. | 5 | 1 |
| 301 | 115.89 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 4 | 2 |
| 302 | 115.89 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 2 | 4 |
| 328 | 115.91 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 7 | 13 |
| 330 | 115.91 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 7 | 19 |
| 448 | 116.05 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 458 | 116.07 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 475 | 116.09 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 476 | 116.09 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 22 | 4 |
| 482 | 116.09 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 16 | 17 |
| 487 | 116.09 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 489 | 116.10 | radiation | 1.0 | 14400 | < th | dose independent | sin | 17 | NA |
| 501 | 116.11 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 17 | 19 |
| 503 | 116.11 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 4 | 15 |
| 538 | 116.12 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 10 | 23 |
| 541 | 116.13 | radiation | 1.0 | 14400 | < th | dose dependent | no | NA | NA |
| 546 | 116.13 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 8 | 21 |
| 565 | 116.14 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 2 | 7 |
| 594 | 116.15 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 7 | 12 |
| 610 | 116.16 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 630 | 116.17 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 19 | 14 |
| 670 | 116.20 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 6 |
| 683 | 116.22 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 8 |
| 690 | 116.23 | radiation | 30.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 709 | 116.23 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 7 | 12 |
| 809 | 116.34 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 17 | 16 |
| 836 | 116.36 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 17 | 19 |
| 873 | 116.39 | radiation | 1.0 | 14400 | > th | dose independent | sin | 17 | NA |