BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0846500 Os01g0846500|AK072322
(381 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G39740.1 | chr2:16576250-16578704 FORWARD LENGTH=512 290 1e-78
AT3G45750.1 | chr3:16793855-16797380 REVERSE LENGTH=683 127 1e-29
AT3G45760.1 | chr3:16801996-16804759 REVERSE LENGTH=475 102 4e-22
AT2G45620.1 | chr2:18792943-18795750 FORWARD LENGTH=765 77 1e-14
AT5G53770.1 | chr5:21826733-21829858 FORWARD LENGTH=531 63 2e-10
>AT2G39740.1 | chr2:16576250-16578704 FORWARD LENGTH=512
Length = 511
Score = 290 bits (741), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 151/351 (43%), Positives = 215/351 (61%), Gaps = 6/351 (1%)
Query: 12 LEKCTEDILSLIKPVEGDRNKRIYAIQELADTIYSAGALRGASVKPFGSFVSQLYAKSGD 71
L+ ++IL +IKP DR+ RI I +L D + S LRGA+V+PFGSFVS L+ + GD
Sbjct: 7 LDPTLQEILQVIKPTRADRDTRITVIDQLRDVLQSVECLRGATVQPFGSFVSNLFTRWGD 66
Query: 72 LDVSVELFNALNLPIS-KRKKQDTLREVRRALQKRGIARHMEFIPNARVPVLQYVSNQYG 130
LD+SV+LF+ ++ + K++KQ L + RAL+ G+ ++F+ +ARVP+L+ VS
Sbjct: 67 LDISVDLFSGSSILFTGKKQKQTLLGHLLRALRASGLWYKLQFVIHARVPILKVVSGHQR 126
Query: 131 ISCDISISNYPGRIKSKIFYWINTLDDRFGDMVLLVKEWAKAQNINDPKNGTLNSYSLCL 190
ISCDISI N G +KS+ +WI+ +D RF D+VLLVKEWAKA NIND K GT NSYSL L
Sbjct: 127 ISCDISIDNLDGLLKSRFLFWISEIDGRFRDLVLLVKEWAKAHNINDSKTGTFNSYSLSL 186
Query: 191 LVLFHFQTCEPAILPPLKEIYEGNIMEDISGRAYYNEKHLDEVCSINIERFRRQNMGQRN 250
LV+FHFQTC PAILPPL+ IY + ++D++G E+ + +V + NI RF+ + N
Sbjct: 187 LVIFHFQTCVPAILPPLRVIYPKSAVDDLTGVRKTAEESIAQVTAANIARFKSERAKSVN 246
Query: 251 QXXXXXXXXXXXXXXXRIDALSDKV-ISTYTGRLERIQDNPRWMDKSYSLFVEDPFEKPD 309
+ I+ + + + +TGR E I N W+ K+YSLFVEDPFE+P
Sbjct: 247 RSSLSELLVSFFAKFSDINVKAQEFGVCPFTGRWETISSNTTWLPKTYSLFVEDPFEQPV 306
Query: 310 NAARAVGSFEFQDIVNAFSNASNKFVSDAHALTDRNGLLSLLCTPDVGSKL 360
NAAR+V I F S + VS+ +RN ++ +L + L
Sbjct: 307 NAARSVSRRNLDRIAQVFQITSRRLVSEC----NRNSIIGILTGQHIQESL 353
>AT3G45750.1 | chr3:16793855-16797380 REVERSE LENGTH=683
Length = 682
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 125/248 (50%), Gaps = 27/248 (10%)
Query: 12 LEKCTEDILSLIKPVEGDRNKR---IYAIQELADTIYSAGALRGASVKPFGSFVSQLYAK 68
L+K D+ +PV D N R + + +A IY ++ +GSFV +Y+
Sbjct: 43 LDKVLNDVYCSFRPVSADYNTRKELVKNLNTMALDIYGKSEESSPVLEAYGSFVMDMYSS 102
Query: 69 SGDLDVSVELFNALNLPISKRKKQDTLREVR---RALQKRGIARHMEFIPNARVPVLQYV 125
DLDVS+ N + I + KK + L+ R+LQ G +++E I +A+VP++++
Sbjct: 103 QSDLDVSINFGNGTS-EIPREKKLEILKRFAKKLRSLQGEGQVKNVESIFSAKVPIVKFS 161
Query: 126 SNQYGISCDISISNYPGRIKSKIFYWINTLDDRFGDMVLLVKEWAKAQNINDPKNGTLNS 185
G+ CD+S+ N G + S+I I+ +D RF + LLVK WAKA +N + TLNS
Sbjct: 162 DQGTGVECDLSVENKDGILNSQIVRIISQIDGRFQKLCLLVKHWAKAHEVNSALHRTLNS 221
Query: 186 YSLCLLVLFHFQTCEPAILPPLKEIYEGNIMEDISGRAYYNEKHLDEVCSINIERFRRQ- 244
S+ LLV H QT P ILPP + + D + N+E+ ++
Sbjct: 222 VSITLLVALHLQTQNPPILPPFSMLLK------------------DGMDPPNVEKRAQKF 263
Query: 245 -NMGQRNQ 251
N GQRNQ
Sbjct: 264 LNWGQRNQ 271
>AT3G45760.1 | chr3:16801996-16804759 REVERSE LENGTH=475
Length = 474
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 108/201 (53%), Gaps = 7/201 (3%)
Query: 21 SLIKPVEGDRNKR---IYAIQELADTIYSAGALRGASVKPFGSFVSQLYAKSGDLDVSVE 77
S +PV D N R + + +A I+ ++ +GSF ++ DLDVS+
Sbjct: 52 SSFRPVSADYNTRKELVKNLNAMAIDIFGKSEESSPVLEAYGSFAMNTFSSQKDLDVSIN 111
Query: 78 LFNALNLPISKRKKQDTLREVR---RALQKRGIARHMEFIPNARVPVLQYVSNQYGISCD 134
F++ + KK + L R+L+ +G R++ I +ARVP++++ GI CD
Sbjct: 112 -FSSGTSEFYREKKLEILTRFATKLRSLEGQGFVRNVVPILSARVPIVRFCDQGTGIECD 170
Query: 135 ISISNYPGRIKSKIFYWINTLDDRFGDMVLLVKEWAKAQNINDPKNGTLNSYSLCLLVLF 194
+++ + G + S+I I+ +DDRF + LL+K WA+A +N+ + TLNS S+ +LV
Sbjct: 171 LTVESKDGILTSQIIRIISQIDDRFQKLCLLIKHWARAHGVNNASHNTLNSISITMLVAH 230
Query: 195 HFQTCEPAILPPLKEIYEGNI 215
H QT P ILPP +++ I
Sbjct: 231 HLQTQSPPILPPFSTLFKDGI 251
>AT2G45620.1 | chr2:18792943-18795750 FORWARD LENGTH=765
Length = 764
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 103/226 (45%), Gaps = 14/226 (6%)
Query: 109 RHMEFIPNARVPVLQYVSNQYGISCDISISNYPGRIKSKIFYWINTLDDRFGDMVLLVKE 168
++++ + ARVP+++ + GISCDI I+N + +K+ +D R + +VK
Sbjct: 522 QNVQALTRARVPIVKLMDPVTGISCDICINNVLAVVNTKLLRDYAQIDVRLRQLAFIVKH 581
Query: 169 WAKAQNINDPKNGTLNSYSLCLLVLFHFQTCEPAILPPLKEIYEGNIMEDISGRAYYNEK 228
WAK++ +N+ GTL+SY+ L+ + Q P ILP L+E+ + + R Y +
Sbjct: 582 WAKSRRVNETYQGTLSSYAYVLMCIHFLQQRRPPILPCLQEMEPTYSVRVDNIRCTYFD- 640
Query: 229 HLDEVCSINIERFRRQNMGQRNQXXXXXXXXXXXXXXXRIDALSDKVISTYTGRL--ERI 286
N++R R N G N+ + V+S TG + +R
Sbjct: 641 --------NVDRLR--NFGSNNRETIAELVWGFFNYWAYAHDYAYNVVSVRTGSILGKRE 690
Query: 287 QDNPRWMDKSYSLF-VEDPFEKPDNAARAVGSFEFQDIVNAFSNAS 331
+D R + L +EDPFE + R V F + + F A+
Sbjct: 691 KDWTRRVGNDRHLICIEDPFETSHDLGRVVDKFSIRVLREEFERAA 736
>AT5G53770.1 | chr5:21826733-21829858 FORWARD LENGTH=531
Length = 530
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 91/182 (50%), Gaps = 9/182 (4%)
Query: 12 LEKCTEDILSLIKPVEGDRNKRIYAIQELADTIYSAGALRGASVKPFGSFVSQLYAKSGD 71
L K D + P + ++ +R A++ ++ I V+ FGS+ + LY + D
Sbjct: 121 LHKEIVDFCDFLLPTQAEKAERDAAVESVSSVIKYI--WPSCKVEVFGSYKTGLYLPTSD 178
Query: 72 LDVSVELFNALNLPISKRKKQDTLREVRRALQKRGIARHMEFIPNARVPVLQYVSNQYGI 131
+DV + L + L P Q LR + RAL +RGIA+++ I ARVP++++V + I
Sbjct: 179 IDVVI-LESGLTNP------QLGLRALSRALSQRGIAKNLLVIAKARVPIIKFVEKKSNI 231
Query: 132 SCDISISNYPGRIKSKIFYWINTLDDRFGDMVLLVKEWAKAQNINDPKNGTLNSYSLCLL 191
+ D+S G ++ + + L++K + + + +N+ +G + SY+L +
Sbjct: 232 AFDLSFDMENGPKAAEFIQDAVSKLPPLRPLCLILKVFLQQRELNEVYSGGIGSYALLAM 291
Query: 192 VL 193
++
Sbjct: 292 LI 293
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.136 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,040,705
Number of extensions: 320832
Number of successful extensions: 807
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 799
Number of HSP's successfully gapped: 5
Length of query: 381
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 281
Effective length of database: 8,364,969
Effective search space: 2350556289
Effective search space used: 2350556289
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)