BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0846500 Os01g0846500|AK072322
(381 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0846500 PAP/25A core domain containing protein 754 0.0
Os08g0559900 PAP/25A core domain containing protein 114 1e-25
Os09g0570600 PAP/25A core domain containing protein 92 7e-19
Os02g0122100 DNA polymerase, beta-like region domain contai... 77 2e-14
Os01g0846450 Conserved hypothetical protein 76 4e-14
Os10g0188300 DNA polymerase, beta-like region domain contai... 70 2e-12
>Os01g0846500 PAP/25A core domain containing protein
Length = 381
Score = 754 bits (1947), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/381 (96%), Positives = 366/381 (96%)
Query: 1 MSIWRVPNYDVLEKCTEDILSLIKPVEGDRNKRIYAIQELADTIYSAGALRGASVKPFGS 60
MSIWRVPNYDVLEKCTEDILSLIKPVEGDRNKRIYAIQELADTIYSAGALRGASVKPFGS
Sbjct: 1 MSIWRVPNYDVLEKCTEDILSLIKPVEGDRNKRIYAIQELADTIYSAGALRGASVKPFGS 60
Query: 61 FVSQLYAKSGDLDVSVELFNALNLPISKRKKQDTLREVRRALQKRGIARHMEFIPNARVP 120
FVSQLYAKSGDLDVSVELFNALNLPISKRKKQDTLREVRRALQKRGIARHMEFIPNARVP
Sbjct: 61 FVSQLYAKSGDLDVSVELFNALNLPISKRKKQDTLREVRRALQKRGIARHMEFIPNARVP 120
Query: 121 VLQYVSNQYGISCDISISNYPGRIKSKIFYWINTLDDRFGDMVLLVKEWAKAQNINDPKN 180
VLQYVSNQYGISCDISISNYPGRIKSKIFYWINTLDDRFGDMVLLVKEWAKAQNINDPKN
Sbjct: 121 VLQYVSNQYGISCDISISNYPGRIKSKIFYWINTLDDRFGDMVLLVKEWAKAQNINDPKN 180
Query: 181 GTLNSYSLCLLVLFHFQTCEPAILPPLKEIYEGNIMEDISGRAYYNEKHLDEVCSINIER 240
GTLNSYSLCLLVLFHFQTCEPAILPPLKEIYEGNIMEDISGRAYYNEKHLDEVCSINIER
Sbjct: 181 GTLNSYSLCLLVLFHFQTCEPAILPPLKEIYEGNIMEDISGRAYYNEKHLDEVCSINIER 240
Query: 241 FRRQNMGQRNQXXXXXXXXXXXXXXXRIDALSDKVISTYTGRLERIQDNPRWMDKSYSLF 300
FRRQNMGQRNQ RIDALSDKVISTYTGRLERIQDNPRWMDKSYSLF
Sbjct: 241 FRRQNMGQRNQSSLSHLLASFFHKFFRIDALSDKVISTYTGRLERIQDNPRWMDKSYSLF 300
Query: 301 VEDPFEKPDNAARAVGSFEFQDIVNAFSNASNKFVSDAHALTDRNGLLSLLCTPDVGSKL 360
VEDPFEKPDNAARAVGSFEFQDIVNAFSNASNKFVSDAHALTDRNGLLSLLCTPDVGSKL
Sbjct: 301 VEDPFEKPDNAARAVGSFEFQDIVNAFSNASNKFVSDAHALTDRNGLLSLLCTPDVGSKL 360
Query: 361 GGRASASRYTNTLVSPHDRFL 381
GGRASASRYTNTLVSPHDRFL
Sbjct: 361 GGRASASRYTNTLVSPHDRFL 381
>Os08g0559900 PAP/25A core domain containing protein
Length = 581
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 90/327 (27%), Positives = 151/327 (46%), Gaps = 41/327 (12%)
Query: 11 VLEKCTEDILSLIKPVEGDRNKR---IYAIQELADTIYSAGALRG-ASVKPFGSFVSQLY 66
VLE ++ ++++P D +R I ++A+ IY G +G V+ FGSF L+
Sbjct: 61 VLEDLLIELYAILRPKPDDYEQRHLMIDVFNKIAEEIY--GKKKGFPVVEAFGSFTMDLF 118
Query: 67 AKSGDLDVSVELFNALNLPISKRKKQDTLREVRRAL---QKRGIARHMEFIPNARVPVLQ 123
DLD+SV + +++ K +R + + L Q+ G + + A+VPVL+
Sbjct: 119 TSKSDLDLSVNFNADFHSQFARKDKISVIRNLAKVLYAHQRNGRCHGVLPVVTAKVPVLK 178
Query: 124 YVSNQYGISCDISISNYPGRIKSKIFYWINTLDDRFGDMVLLVKEWAKAQNINDPKNGTL 183
+ G+ CDIS+ N G +S IF I+++D+RF + L+K WAKA ++N P++ T+
Sbjct: 179 VIDKGTGVECDISVENKDGMSRSMIFKLISSIDERFQILCYLMKFWAKAHDVNCPRDRTM 238
Query: 184 NSYSLCLLVLFHFQTCEPAILPPLKEIYEGNIMEDISGRAYYNEKHLDEVCSINIERFRR 243
+S ++ LV FH QT P ILP + + + SI
Sbjct: 239 SSMAIISLVAFHLQTRRPPILPAFSALLKDG----------------PDFPSIQRNVSLV 282
Query: 244 QNMGQRNQXXXXXXXXXXXXXXXRIDALSDKVI--STYTGRLERIQDNPRWMDKSY---- 297
+ G RN+ ++ L ++ + S + G W+ K++
Sbjct: 283 EGFGSRNKESVAELFVSLMSKLLSVEGLWEQGLCASNFEG---------SWIFKTWERGV 333
Query: 298 -SLFVEDPFEKPDNAARAVGSFEFQDI 323
+L VED ++ N ARAVG E Q I
Sbjct: 334 GNLSVEDFLDRSQNFARAVGKEEMQKI 360
>Os09g0570600 PAP/25A core domain containing protein
Length = 310
Score = 92.0 bits (227), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 43/99 (43%), Positives = 62/99 (62%)
Query: 114 IPNARVPVLQYVSNQYGISCDISISNYPGRIKSKIFYWINTLDDRFGDMVLLVKEWAKAQ 173
+ ARVP++ + GI CDI++ N G +S IF +I++LD RF + LVK WAK
Sbjct: 115 VVTARVPIVNVIDRGTGIECDITVENKDGMTRSMIFKFISSLDPRFQILSYLVKFWAKIH 174
Query: 174 NINDPKNGTLNSYSLCLLVLFHFQTCEPAILPPLKEIYE 212
++N P+ TL+S S+ LV FH QT +P ILPPL + +
Sbjct: 175 DVNSPRERTLSSMSIVSLVAFHLQTRDPPILPPLSALLK 213
>Os02g0122100 DNA polymerase, beta-like region domain containing protein
Length = 597
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/336 (22%), Positives = 143/336 (42%), Gaps = 27/336 (8%)
Query: 4 WRVPNYDVLEKCTEDILSL---IKPVEGDRNKRIYAIQELADTIYSAGALRGASVKPFGS 60
WRV ++ T +LSL + P E + K+ I+ L +++ + A + +GS
Sbjct: 262 WRVERRHDIDAFTPGLLSLYESLNPSEEHKAKQRQLIESLTNSV--SKEWPNAQLHLYGS 319
Query: 61 FVSQLYAKSGDLDVSVELFNALNLPISKRKKQDTLREVRRALQKRGIARHMEFIPNARVP 120
+ D+DV +++ A I++ ++ ++E I +ARVP
Sbjct: 320 CANSFGNSHSDVDVCLQIDTAAEENIAELLLALA------ETLRKDDFDNVEAITSARVP 373
Query: 121 VLQYVSNQYGISCDISISNYPGRIKSKIFYWINTLDDRFGDMVLLVKEWAKAQNINDPKN 180
+++ G+SCDI ++N +K+ +D+R + +VK WAK + +N+
Sbjct: 374 IVKIADPGSGLSCDICVNNLFAVANTKLLKDYAQIDERLLQLAFIVKHWAKLRGVNETYR 433
Query: 181 GTLNSYSLCLLVLFHFQTCEPAILPPLKEIYEG-NIMEDISGRAYYNEKHLDEVCSINIE 239
GTL+SY+ L+ + Q EP ILP L+ + ++ D + AY+++ +D++
Sbjct: 434 GTLSSYAYVLMCISFLQQREPKILPCLQAMEPTYTVVVDGTECAYFDQ--VDQL------ 485
Query: 240 RFRRQNMGQRNQXXXXXXXXXXXXXXXRIDALSDKVISTYTGRLERIQD---NPRWMDKS 296
++ G N+ + VIS G Q+ R +
Sbjct: 486 ----KDFGAENKESIAELLWAFFHYWAFHHDYRNDVISVRMGNTISKQEKNWTTRVGNDR 541
Query: 297 YSLFVEDPFEKPDNAARAVGSFEFQDIVNAFSNASN 332
+ + +EDPFE + R V + + F A+
Sbjct: 542 HLICIEDPFETSHDLGRVVDRQTIRVLREEFERAAT 577
>Os01g0846450 Conserved hypothetical protein
Length = 172
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 50/79 (63%)
Query: 225 YNEKHLDEVCSINIERFRRQNMGQRNQXXXXXXXXXXXXXXXRIDALSDKVISTYTGRLE 284
Y+E+HLDEVCS N+ +F+ +N +RN+ I LS VISTYTG+ +
Sbjct: 12 YDEEHLDEVCSENLAKFQSKNKERRNESSLCHLLATFFHKFSSIGTLSGDVISTYTGQFK 71
Query: 285 RIQDNPRWMDKSYSLFVED 303
RI++NP WM +SYSLF +D
Sbjct: 72 RIEENPSWMARSYSLFHQD 90
>Os10g0188300 DNA polymerase, beta-like region domain containing protein
Length = 320
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/280 (22%), Positives = 123/280 (43%), Gaps = 29/280 (10%)
Query: 58 FGSFVSQLYAKSGDLDVSVELFNALNLPISKRKKQDTLREVRRALQKRGIARHMEFIPNA 117
+GS + + D+D+ L++ + K D + ++ L G R+++ + A
Sbjct: 40 YGSCANSFGFSNSDIDL------CLSIDEKEMSKVDIILKLAHILHA-GNLRNIQALTRA 92
Query: 118 RVPVLQYVSNQYGISCDISISNYPGRIKSKIFYWINTLDDRFGDMVLLVKEWAKAQNIND 177
RVP+++ + G+SCDI ++N + +K+ + +D R + +VK WAK++ +N+
Sbjct: 93 RVPIVKLMDPNTGLSCDICVNNLLAVVNTKLLRDYSRIDKRLRPLAFIVKHWAKSRCVNE 152
Query: 178 PKNGTLNSYSLCLLVLFHFQTCEPAILPPLKEI---YEGNIMEDISGRAYYNEKHLDEVC 234
GTL+SY+ ++ + + Q+ ILP L+E+ Y + +I + D+V
Sbjct: 153 TYQGTLSSYAYVIMCIHYLQS--QRILPCLQEMEPTYYVTVDNNICA-------YFDQVD 203
Query: 235 SINIERFRRQNMGQRNQXXXXXXXXXXXXXXXRIDALSDKVISTYTGRL--ERIQDNPRW 292
+N G + + + VIS TGR + ++D R
Sbjct: 204 KLN-------GFGAQCKDTLSRLLWGFFRYWAYAHNYTKDVISIRTGRTISKNMKDWTRR 256
Query: 293 MDKSYSLF-VEDPFEKPDNAARAVGSFEFQDIVNAFSNAS 331
+ L +EDPFE + R V + + F A+
Sbjct: 257 IGNDRHLICIEDPFETSHDLGRVVDNRSIWALREEFERAA 296
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.136 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,003,117
Number of extensions: 453017
Number of successful extensions: 1037
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1036
Number of HSP's successfully gapped: 6
Length of query: 381
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 278
Effective length of database: 11,657,759
Effective search space: 3240857002
Effective search space used: 3240857002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)