Os10g0188300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : DNA polymerase, beta-like region domain containing protein.
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Os10g0188300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : DNA polymerase, beta-like region domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.05 | 0.194 | 11 | 0.345 | 0.799 | 0.219 | 0.294 | 1.51 | -0.0306 | 13.8 | 19.57 | 2013 | -- | -- |
| 17.65 | 0.196 | 11.1 | -0.0799 | 0.716 | 0.366 | 0.314 | -- | -0.152 | 13 | 24.46 | 457 | -- | -- |
| 17.32 | 0.194 | 11 | 0.34 | 0.795 | 0.213 | -- | 1.42 | -0.0334 | 13.8 | 19.87 | 1781 | -- | -- |
| 17.29 | 0.194 | 11.1 | -0.052 | 0.702 | 0.476 | -- | -- | -0.121 | 12.8 | 24.8 | 407 | -- | -- |
| 36.01 | 0.279 | 11.1 | -0.121 | -- | 0.933 | -- | 0.201 | -0.203 | -- | 24.11 | 2 | -- | -- |
| 21.21 | 0.216 | 11.1 | 0.0291 | 0.789 | -- | 0.254 | -- | -0.0832 | 13.9 | -- | -- | -- | -- |
| 21.46 | 0.217 | 11.1 | 0.0369 | 0.789 | -- | -- | -- | -0.0818 | 13.9 | -- | -- | -- | -- |
| 35.88 | 0.279 | 11.1 | -0.139 | -- | 0.964 | -- | -- | -0.207 | -- | 24.18 | 15 | -- | -- |
| 17.34 | 0.194 | 11.1 | -- | 0.69 | 0.478 | -- | -- | -0.116 | 12.9 | 25 | 378 | -- | -- |
| 59.04 | 0.359 | 11.1 | 0.00434 | -- | -- | -- | -- | -0.1 | -- | -- | -- | -- | -- |
| 21.49 | 0.217 | 11.1 | -- | 0.788 | -- | -- | -- | -0.0859 | 13.9 | -- | -- | -- | -- |
| 36.37 | 0.281 | 11.1 | -- | -- | 0.945 | -- | -- | -0.183 | -- | 24.3 | 14 | -- | -- |
| 59.04 | 0.359 | 11.1 | -- | -- | -- | -- | -- | -0.101 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.44 | temperature | 15 | 270 | > th | dose dependent | rect. | 11 | 14 |
| 18 | 16.78 | temperature | 25 | 4320 | < th | dose independent | rect. | 3 | 5 |
| 19 | 16.78 | temperature | 25 | 4320 | > th | dose independent | rect. | 2 | 6 |
| 41 | 16.88 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 15 |
| 53 | 16.92 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 14 |
| 56 | 16.93 | temperature | 15 | 4320 | > th | dose dependent | rect. | 19 | 2 |
| 61 | 16.93 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 5 |
| 68 | 16.95 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 75 | 16.95 | temperature | 30 | 4320 | < th | dose dependent | rect. | 19 | 2 |
| 93 | 16.96 | temperature | 15 | 4320 | > th | dose dependent | rect. | 17 | 8 |
| 99 | 16.97 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 16 |
| 109 | 16.97 | temperature | 25 | 1440 | > th | dose dependent | rect. | 24 | 9 |
| 113 | 16.98 | temperature | 25 | 4320 | > th | dose independent | sin | 11 | NA |
| 128 | 16.98 | temperature | 25 | 1440 | > th | dose dependent | rect. | 23 | 11 |
| 131 | 16.98 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 19 |
| 136 | 16.99 | temperature | 25 | 1440 | > th | dose dependent | sin | 8 | NA |
| 154 | 17.00 | temperature | 25 | 1440 | > th | dose dependent | rect. | 1 | 7 |
| 174 | 17.01 | temperature | 20 | 90 | > th | dose dependent | sin | 18 | NA |
| 180 | 17.01 | temperature | 25 | 270 | > th | dose dependent | rect. | 10 | 7 |
| 186 | 17.01 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 10 |
| 194 | 17.02 | temperature | 25 | 4320 | > th | dose independent | rect. | 22 | 11 |
| 198 | 17.02 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 14 |
| 227 | 17.03 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 238 | 17.03 | temperature | 10 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 272 | 17.05 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 2 |
| 317 | 17.06 | temperature | 25 | 4320 | > th | dose dependent | rect. | 19 | 13 |
| 321 | 17.06 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 16 |
| 335 | 17.07 | temperature | 30 | 270 | < th | dose independent | rect. | 5 | 15 |
| 371 | 17.08 | temperature | 15 | 4320 | > th | dose dependent | sin | 15 | NA |
| 378 | 17.08 | temperature | 25 | 4320 | > th | dose dependent | rect. | 19 | 10 |
| 433 | 17.10 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 6 |
| 480 | 17.11 | temperature | 25 | 4320 | < th | dose independent | sin | 10 | NA |
| 483 | 17.11 | temperature | 30 | 1440 | < th | dose independent | rect. | 10 | 4 |
| 486 | 17.11 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 9 |
| 526 | 17.12 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 535 | 17.12 | temperature | 25 | 4320 | < th | dose independent | rect. | 22 | 11 |
| 661 | 17.15 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 12 |
| 662 | 17.15 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 12 |
| 714 | 17.15 | temperature | 15 | 720 | > th | dose dependent | rect. | 5 | 20 |
| 722 | 17.16 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 5 |
| 729 | 17.16 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 10 |
| 793 | 17.17 | temperature | 20 | 1440 | > th | dose dependent | sin | 4 | NA |
| 795 | 17.17 | temperature | 30 | 4320 | < th | dose dependent | sin | 15 | NA |
| 894 | 17.18 | temperature | 20 | 10 | > th | dose dependent | rect. | 14 | 14 |
| 914 | 17.18 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 19 |
| 943 | 17.19 | temperature | 25 | 1440 | > th | dose dependent | rect. | 5 | 7 |