Os09g0570600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : PAP/25A core domain containing protein.
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Os09g0570600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : PAP/25A core domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 91.68 | 0.45 | 7.03 | 0.924 | 1.3 | -0.455 | -0.969 | -3.21 | -0.0618 | 20.2 | 29.42 | 3355 | -- | -- |
| 91.72 | 0.446 | 6.95 | 1.42 | 1.3 | -0.667 | -0.882 | -- | 0.0325 | 20.2 | 27.86 | 2678 | -- | -- |
| 93.82 | 0.451 | 7.03 | 0.946 | 1.3 | -0.395 | -- | -3.07 | -0.0577 | 20.2 | 29.86 | 2628 | -- | -- |
| 94.47 | 0.453 | 6.95 | 1.47 | 1.32 | -0.739 | -- | -- | 0.0143 | 20.2 | 28.32 | 2648 | -- | -- |
| 185.14 | 0.634 | 7.09 | 0.0919 | -- | 0.179 | -- | -7.33 | -0.101 | -- | 29.35 | 2776 | -- | -- |
| 114.02 | 0.501 | 6.94 | 1.22 | 1.28 | -- | -0.995 | -- | 0.0735 | 20.1 | -- | -- | -- | -- |
| 116.94 | 0.506 | 6.94 | 1.25 | 1.29 | -- | -- | -- | 0.0734 | 20 | -- | -- | -- | -- |
| 184.28 | 0.632 | 6.93 | 1.42 | -- | -0.668 | -- | -- | -0.028 | -- | 29.2 | 5686 | -- | -- |
| 147.33 | 0.565 | 7 | -- | 1.29 | -0.516 | -- | -- | -0.183 | 20.2 | 30.06 | 2627 | -- | -- |
| 207.35 | 0.673 | 6.91 | 1.24 | -- | -- | -- | -- | 0.0567 | -- | -- | -- | -- | -- |
| 158.19 | 0.588 | 6.97 | -- | 1.28 | -- | -- | -- | -0.066 | 20 | -- | -- | -- | -- |
| 236.37 | 0.716 | 6.96 | -- | -- | -0.451 | -- | -- | -0.165 | -- | 30.1 | 5643 | -- | -- |
| 247.78 | 0.735 | 6.94 | -- | -- | -- | -- | -- | -0.0806 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 91.38 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 15 |
| 2 | 91.43 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 4 |
| 4 | 91.48 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 12 |
| 5 | 91.50 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 2 |
| 7 | 91.51 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 13 |
| 15 | 91.70 | radiation | 20 | 1440 | > th | dose dependent | rect. | 16 | 15 |
| 19 | 91.82 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 2 |
| 20 | 91.82 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 15 |
| 31 | 91.91 | radiation | 20 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 48 | 92.01 | humidity | 70 | 4320 | > th | dose independent | rect. | 19 | 10 |
| 51 | 92.06 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 66 | 92.11 | humidity | 70 | 4320 | > th | dose independent | rect. | 19 | 2 |
| 74 | 92.30 | temperature | 30 | 4320 | > th | dose dependent | rect. | 12 | 7 |
| 88 | 92.31 | temperature | 30 | 4320 | > th | dose dependent | sin | 14 | NA |
| 106 | 92.33 | temperature | 30 | 4320 | > th | dose independent | rect. | 16 | 3 |
| 123 | 92.35 | temperature | 30 | 4320 | < th | dose independent | rect. | 16 | 5 |
| 126 | 92.36 | temperature | 30 | 4320 | < th | dose independent | rect. | 16 | 3 |
| 188 | 92.50 | temperature | 30 | 4320 | > th | dose dependent | rect. | 13 | 2 |
| 194 | 92.52 | temperature | 30 | 4320 | > th | dose independent | sin | 14 | NA |
| 268 | 92.63 | temperature | 30 | 4320 | > th | dose independent | rect. | 12 | 7 |
| 298 | 92.64 | temperature | 30 | 4320 | > th | dose dependent | no | NA | NA |
| 406 | 92.65 | temperature | 30 | 4320 | > th | dose dependent | rect. | 16 | 23 |
| 409 | 92.67 | temperature | 30 | 4320 | < th | dose independent | sin | 13 | NA |
| 439 | 92.71 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 489 | 92.74 | temperature | 30 | 4320 | > th | dose independent | rect. | 16 | 22 |
| 490 | 92.74 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 3 |
| 534 | 92.79 | temperature | 30 | 1440 | > th | dose independent | rect. | 16 | 20 |
| 535 | 92.79 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 20 |
| 541 | 92.80 | temperature | 30 | 4320 | < th | dose independent | rect. | 10 | 9 |
| 552 | 92.80 | temperature | 30 | 4320 | > th | dose independent | rect. | 18 | 20 |
| 578 | 92.81 | temperature | 30 | 4320 | > th | dose independent | rect. | 18 | 23 |
| 638 | 92.86 | temperature | 30 | 4320 | > th | dose independent | no | NA | NA |
| 692 | 92.86 | temperature | 30 | 4320 | < th | dose independent | rect. | 18 | 19 |
| 749 | 92.88 | temperature | 30 | 4320 | > th | dose independent | rect. | 12 | 1 |
| 761 | 92.89 | temperature | 30 | 4320 | < th | dose independent | rect. | 18 | 23 |
| 809 | 92.93 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 17 |
| 826 | 92.94 | temperature | 30 | 4320 | < th | dose independent | rect. | 2 | 17 |
| 844 | 92.95 | temperature | 30 | 4320 | < th | dose independent | no | NA | NA |
| 845 | 92.95 | temperature | 30 | 4320 | < th | dose independent | rect. | 12 | 1 |
| 975 | 93.03 | temperature | 30 | 1440 | > th | dose independent | rect. | 18 | 17 |
| 979 | 93.04 | wind | 1 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 987 | 93.04 | radiation | 20 | 4320 | > th | dose dependent | rect. | 15 | 17 |