BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0570600 Os09g0570600|AK103632
(310 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0570600 PAP/25A core domain containing protein 523 e-149
Os08g0559900 PAP/25A core domain containing protein 288 3e-78
Os01g0846500 PAP/25A core domain containing protein 92 4e-19
Os02g0122100 DNA polymerase, beta-like region domain contai... 91 1e-18
Os10g0188300 DNA polymerase, beta-like region domain contai... 75 7e-14
>Os09g0570600 PAP/25A core domain containing protein
Length = 310
Score = 523 bits (1347), Expect = e-149, Method: Compositional matrix adjust.
Identities = 271/310 (87%), Positives = 271/310 (87%)
Query: 1 MTGEDTTRXXXXXXXXXXXXXXXXXXXXXXXXXEVSAWDPQVLRXXXXXXXXXXXXXXSV 60
MTGEDTTR EVSAWDPQVLR SV
Sbjct: 1 MTGEDTTRSPPPSPPAVFSMPSSSSESTQSSDSEVSAWDPQVLRAHAECLESEELAALSV 60
Query: 61 NRTLLPILDNLLLQVYTMLRPKPLDYEQRTTLVHVFNNIANQIFGNGIFCGVLPVVTARV 120
NRTLLPILDNLLLQVYTMLRPKPLDYEQRTTLVHVFNNIANQIFGNGIFCGVLPVVTARV
Sbjct: 61 NRTLLPILDNLLLQVYTMLRPKPLDYEQRTTLVHVFNNIANQIFGNGIFCGVLPVVTARV 120
Query: 121 PIVNVIDRGTGIECDITVENKDGMTRSMIFKFISSLDPRFQILSYLVKFWAKIHDVNSPR 180
PIVNVIDRGTGIECDITVENKDGMTRSMIFKFISSLDPRFQILSYLVKFWAKIHDVNSPR
Sbjct: 121 PIVNVIDRGTGIECDITVENKDGMTRSMIFKFISSLDPRFQILSYLVKFWAKIHDVNSPR 180
Query: 181 ERTLSSMSIVSLVAFHLQTRDPPILPPLSALLKDGSDFESVERNTLAFKGFGRTNKETVA 240
ERTLSSMSIVSLVAFHLQTRDPPILPPLSALLKDGSDFESVERNTLAFKGFGRTNKETVA
Sbjct: 181 ERTLSSMSIVSLVAFHLQTRDPPILPPLSALLKDGSDFESVERNTLAFKGFGRTNKETVA 240
Query: 241 ELFVSLISKLLSAESLWEHGLCASNFEASWISKTWKKGIGNLNVSWEKGDAEDLQMSSRL 300
ELFVSLISKLLSAESLWEHGLCASNFEASWISKTWKKGIGNLNVSWEKGDAEDLQMSSRL
Sbjct: 241 ELFVSLISKLLSAESLWEHGLCASNFEASWISKTWKKGIGNLNVSWEKGDAEDLQMSSRL 300
Query: 301 CFELVRFHEG 310
CFELVRFHEG
Sbjct: 301 CFELVRFHEG 310
>Os08g0559900 PAP/25A core domain containing protein
Length = 581
Score = 288 bits (737), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 136/199 (68%), Positives = 162/199 (81%), Gaps = 3/199 (1%)
Query: 89 RTTLVHVFNNIANQIFG---NGIFCGVLPVVTARVPIVNVIDRGTGIECDITVENKDGMT 145
R + V N+A ++ NG GVLPVVTA+VP++ VID+GTG+ECDI+VENKDGM+
Sbjct: 140 RKDKISVIRNLAKVLYAHQRNGRCHGVLPVVTAKVPVLKVIDKGTGVECDISVENKDGMS 199
Query: 146 RSMIFKFISSLDPRFQILSYLVKFWAKIHDVNSPRERTLSSMSIVSLVAFHLQTRDPPIL 205
RSMIFK ISS+D RFQIL YL+KFWAK HDVN PR+RT+SSM+I+SLVAFHLQTR PPIL
Sbjct: 200 RSMIFKLISSIDERFQILCYLMKFWAKAHDVNCPRDRTMSSMAIISLVAFHLQTRRPPIL 259
Query: 206 PPLSALLKDGSDFESVERNTLAFKGFGRTNKETVAELFVSLISKLLSAESLWEHGLCASN 265
P SALLKDG DF S++RN +GFG NKE+VAELFVSL+SKLLS E LWE GLCASN
Sbjct: 260 PAFSALLKDGPDFPSIQRNVSLVEGFGSRNKESVAELFVSLMSKLLSVEGLWEQGLCASN 319
Query: 266 FEASWISKTWKKGIGNLNV 284
FE SWI KTW++G+GNL+V
Sbjct: 320 FEGSWIFKTWERGVGNLSV 338
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 37 AWDPQVLRXXXXXXXXXXXXXXSVNRTLLPILDNLLLQVYTMLRPKPLDYEQRTTLVHVF 96
+WD Q S+N TLLP+L++LL+++Y +LRPKP DYEQR ++ VF
Sbjct: 31 SWDSQAALCKRAESCELEAEVPSINPTLLPVLEDLLIELYAILRPKPDDYEQRHLMIDVF 90
Query: 97 NNIANQIFGNGIFCGVLPVVTA 118
N IA +I+G PVV A
Sbjct: 91 NKIAEEIYGKK---KGFPVVEA 109
>Os01g0846500 PAP/25A core domain containing protein
Length = 381
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 81/159 (50%), Gaps = 18/159 (11%)
Query: 115 VVTARVPIVNVIDRGTGIECDITVENKDGMTRSMIFKFISSLDPRFQILSYLVKFWAKIH 174
+ ARVP++ + GI CDI++ N G +S IF +I++LD RF + LVK WAK
Sbjct: 114 IPNARVPVLQYVSNQYGISCDISISNYPGRIKSKIFYWINTLDDRFGDMVLLVKEWAKAQ 173
Query: 175 DVNSPRERTLSSMSIVSLVAFHLQTRDPPILPPLSALLKDGSDFE--------------- 219
++N P+ TL+S S+ LV FH QT +P ILPPL + +G+ E
Sbjct: 174 NINDPKNGTLNSYSLCLLVLFHFQTCEPAILPPLKEIY-EGNIMEDISGRAYYNEKHLDE 232
Query: 220 --SVERNTLAFKGFGRTNKETVAELFVSLISKLLSAESL 256
S+ + G+ N+ +++ L S K ++L
Sbjct: 233 VCSINIERFRRQNMGQRNQSSLSHLLASFFHKFFRIDAL 271
>Os02g0122100 DNA polymerase, beta-like region domain containing protein
Length = 597
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 80/144 (55%), Gaps = 13/144 (9%)
Query: 109 FCGVLPVVTARVPIVNVIDRGTGIECDITVENKDGMTRSMIFKFISSLDPRFQILSYLVK 168
F V + +ARVPIV + D G+G+ CDI V N + + + K + +D R L+++VK
Sbjct: 361 FDNVEAITSARVPIVKIADPGSGLSCDICVNNLFAVANTKLLKDYAQIDERLLQLAFIVK 420
Query: 169 FWAKIHDVNSPRERTLSSMSIVSLVAFHLQTRDPPILPPLSAL------LKDGSD---FE 219
WAK+ VN TLSS + V + LQ R+P ILP L A+ + DG++ F+
Sbjct: 421 HWAKLRGVNETYRGTLSSYAYVLMCISFLQQREPKILPCLQAMEPTYTVVVDGTECAYFD 480
Query: 220 SVERNTLAFKGFGRTNKETVAELF 243
V++ K FG NKE++AEL
Sbjct: 481 QVDQ----LKDFGAENKESIAELL 500
>Os10g0188300 DNA polymerase, beta-like region domain containing protein
Length = 320
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 77/149 (51%), Gaps = 11/149 (7%)
Query: 102 QIFGNGIFCGVLPVVTARVPIVNVIDRGTGIECDITVENKDGMTRSMIFKFISSLDPRFQ 161
I G + + ARVPIV ++D TG+ CDI V N + + + + S +D R +
Sbjct: 76 HILHAGNLRNIQALTRARVPIVKLMDPNTGLSCDICVNNLLAVVNTKLLRDYSRIDKRLR 135
Query: 162 ILSYLVKFWAKIHDVNSPRERTLSSMSIVSLVAFHLQTRDPPILPPLSALLKDGSDFESV 221
L+++VK WAK VN + TLSS + V + +LQ++ ILP L + + + + +V
Sbjct: 136 PLAFIVKHWAKSRCVNETYQGTLSSYAYVIMCIHYLQSQR--ILPCLQEM--EPTYYVTV 191
Query: 222 ERNTLAF-------KGFGRTNKETVAELF 243
+ N A+ GFG K+T++ L
Sbjct: 192 DNNICAYFDQVDKLNGFGAQCKDTLSRLL 220
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.136 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,908,044
Number of extensions: 325062
Number of successful extensions: 678
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 676
Number of HSP's successfully gapped: 6
Length of query: 310
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 209
Effective length of database: 11,762,187
Effective search space: 2458297083
Effective search space used: 2458297083
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)