Os01g0672700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : DNA polymerase, beta-like region domain containing protein.
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Os01g0672700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : DNA polymerase, beta-like region domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.59 | 0.284 | 10.1 | -0.878 | 0.222 | 0.983 | -0.568 | -0.938 | -0.369 | 4.38 | 17.2 | 99 | -- | -- |
| 37.2 | 0.284 | 10 | -0.727 | 0.22 | 1 | -0.304 | -- | -0.325 | 4.48 | 16.25 | 94 | -- | -- |
| 37.25 | 0.284 | 10.1 | -0.8 | 0.225 | 0.998 | -- | -0.458 | -0.348 | 4.18 | 17.1 | 92 | -- | -- |
| 37.44 | 0.285 | 10 | -0.73 | 0.224 | 1.02 | -- | -- | -0.328 | 4.21 | 16.26 | 92 | -- | -- |
| 39.16 | 0.291 | 10.1 | -0.74 | -- | 0.817 | -- | -0.42 | -0.31 | -- | 16.39 | 89 | -- | -- |
| 49.42 | 0.33 | 10 | -0.513 | 0.111 | -- | 0.372 | -- | -0.173 | 15.1 | -- | -- | -- | -- |
| 49.67 | 0.33 | 10 | -0.505 | 0.122 | -- | -- | -- | -0.171 | 13.1 | -- | -- | -- | -- |
| 39.29 | 0.292 | 10 | -0.677 | -- | 0.852 | -- | -- | -0.292 | -- | 15.1 | 68 | -- | -- |
| 49.99 | 0.329 | 10 | -- | 0.116 | 0.647 | -- | -- | -0.202 | 5.18 | 17.8 | 87 | -- | -- |
| 50.6 | 0.332 | 10 | -0.51 | -- | -- | -- | -- | -0.173 | -- | -- | -- | -- | -- |
| 56.39 | 0.351 | 10 | -- | 0.131 | -- | -- | -- | -0.115 | 13.3 | -- | -- | -- | -- |
| 50.45 | 0.332 | 10 | -- | -- | 0.581 | -- | -- | -0.194 | -- | 17.7 | 67 | -- | -- |
| 57.45 | 0.354 | 10 | -- | -- | -- | -- | -- | -0.117 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.85 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 22 |
| 8 | 36.33 | temperature | 15 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 12 | 36.48 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 7 |
| 13 | 36.49 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 2 |
| 18 | 36.52 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 19 | 36.53 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 23 | 36.57 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 7 |
| 35 | 36.67 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 2 |
| 37 | 36.67 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 43 | 36.72 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 51 | 36.79 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 23 |
| 55 | 36.81 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 59 | 36.83 | temperature | 15 | 90 | > th | dose dependent | no | NA | NA |
| 64 | 36.87 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 22 |
| 72 | 36.89 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 78 | 36.92 | temperature | 30 | 270 | < th | dose dependent | rect. | 10 | 23 |
| 84 | 36.94 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 91 | 36.98 | temperature | 15 | 90 | > th | dose dependent | rect. | 24 | 23 |
| 95 | 37.00 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 100 | 37.03 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 11 |
| 172 | 37.30 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 5 |
| 189 | 37.34 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 3 |
| 200 | 37.37 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 8 |
| 202 | 37.37 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 7 |
| 212 | 37.39 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 5 |
| 218 | 37.40 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 228 | 37.41 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 269 | 37.46 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 356 | 37.56 | temperature | 20 | 1440 | < th | dose independent | sin | 11 | NA |
| 481 | 37.70 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 491 | 37.72 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 500 | 37.73 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 519 | 37.75 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 21 |
| 643 | 37.92 | temperature | 25 | 1440 | < th | dose dependent | sin | 10 | NA |
| 817 | 38.15 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 23 |
| 846 | 38.19 | temperature | 15 | 10 | > th | dose dependent | rect. | 24 | 23 |
| 867 | 38.23 | temperature | 15 | 1440 | > th | dose dependent | sin | 10 | NA |
| 947 | 38.33 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |