BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0185100 Os10g0185100|AK065091
         (48 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0185100  Hypothetical protein                                 94   2e-20
Os10g0189800                                                       86   8e-18
Os08g0271600  Conserved hypothetical protein                       82   6e-17
Os03g0732200  Conserved hypothetical protein                       77   3e-15

>Os10g0185100 Hypothetical protein
          Length = 48

 Score = 94.0 bits (232), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 48/48 (100%), Positives = 48/48 (100%)

Query: 1  MVKQLEDQKEAARKNEEETEKLRQQGSEIQSFVRSLIGSKFASLDAQQ 48
          MVKQLEDQKEAARKNEEETEKLRQQGSEIQSFVRSLIGSKFASLDAQQ
Sbjct: 1  MVKQLEDQKEAARKNEEETEKLRQQGSEIQSFVRSLIGSKFASLDAQQ 48



>Os10g0189800 
          Length = 275

 Score = 85.5 bits (210), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 43/46 (93%), Positives = 44/46 (95%)

Query: 3   KQLEDQKEAARKNEEETEKLRQQGSEIQSFVRSLIGSKFASLDAQQ 48
           KQLEDQKEAARKNEEETEKLRQQGSEIQSF+RSL GSKFAS DAQQ
Sbjct: 230 KQLEDQKEAARKNEEETEKLRQQGSEIQSFLRSLFGSKFASSDAQQ 275



>Os08g0271600 Conserved hypothetical protein
          Length = 274

 Score = 82.4 bits (202), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 41/46 (89%), Positives = 42/46 (91%)

Query: 3   KQLEDQKEAARKNEEETEKLRQQGSEIQSFVRSLIGSKFASLDAQQ 48
           KQLEDQKE ARKNEEETEKLR QGSEIQSF+RSL GSKFAS DAQQ
Sbjct: 229 KQLEDQKEVARKNEEETEKLRHQGSEIQSFLRSLFGSKFASSDAQQ 274



>Os03g0732200 Conserved hypothetical protein
          Length = 104

 Score = 77.0 bits (188), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 39/40 (97%), Positives = 39/40 (97%)

Query: 9   KEAARKNEEETEKLRQQGSEIQSFVRSLIGSKFASLDAQQ 48
           KEAARKNEEETEKLRQQGSEIQSFVRSLIGSKFAS DAQQ
Sbjct: 65  KEAARKNEEETEKLRQQGSEIQSFVRSLIGSKFASSDAQQ 104



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.305    0.120    0.290 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,129,037
Number of extensions: 26518
Number of successful extensions: 223
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 223
Number of HSP's successfully gapped: 4
Length of query: 48
Length of database: 17,035,801
Length adjustment: 21
Effective length of query: 27
Effective length of database: 15,939,307
Effective search space: 430361289
Effective search space used: 430361289
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 149 (62.0 bits)