BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0147900 Os10g0147900|AK105620
(660 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0147900 Armadillo-like helical domain containing protein 1055 0.0
Os03g0244700 Armadillo-like helical domain containing protein 759 0.0
Os09g0536200 Armadillo-like helical domain containing protein 512 e-145
Os08g0548500 Armadillo-like helical domain containing protein 462 e-130
>Os10g0147900 Armadillo-like helical domain containing protein
Length = 660
Score = 1055 bits (2729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 537/660 (81%), Positives = 537/660 (81%)
Query: 1 MGEGVKAMLARPIQLADEVAKQCGAARCFRAECGEXXXXXXXXXXXXXXXXXXXXYDRPA 60
MGEGVKAMLARPIQLADEVAKQCGAARCFRAECGE YDRPA
Sbjct: 1 MGEGVKAMLARPIQLADEVAKQCGAARCFRAECGELKARADKLAALLRQAARADLYDRPA 60
Query: 61 ARIMXXXXXXXXXXXXXXXXXXXGHPRLRRLFTLSPAAGFPRTVALLDTALEDVAWLLRI 120
ARIM GHPRLRRLFTLSPAAGFPRTVALLDTALEDVAWLLRI
Sbjct: 61 ARIMAGAQQALLKASSLAARCASGHPRLRRLFTLSPAAGFPRTVALLDTALEDVAWLLRI 120
Query: 121 SSPRSXXXXXXXXXXXXXXXXXXXXXLRGLPNIAQNEPILFLIWDHVARLHTGGXXXXXX 180
SSPRS LRGLPNIAQNEPILFLIWDHVARLHTGG
Sbjct: 121 SSPRSGGGGGGGGGGGDDDGDGDDGDLRGLPNIAQNEPILFLIWDHVARLHTGGLAARAD 180
Query: 181 XXXXXXXXXXXXQHFAKLIIEEDGVPPLLRLLKEGTDDGQEAAARALGLLGCDDESIDKL 240
QHFAKLIIEEDGVPPLLRLLKEGTDDGQEAAARALGLLGCDDESIDKL
Sbjct: 181 SAANLASLARDSQHFAKLIIEEDGVPPLLRLLKEGTDDGQEAAARALGLLGCDDESIDKL 240
Query: 241 VQAGVCSVFAAALKDPPMRVQAAVADAIGTLADRSATCQELFAQNNAVRYLVGHLASGTI 300
VQAGVCSVFAAALKDPPMRVQAAVADAIGTLADRSATCQELFAQNNAVRYLVGHLASGTI
Sbjct: 241 VQAGVCSVFAAALKDPPMRVQAAVADAIGTLADRSATCQELFAQNNAVRYLVGHLASGTI 300
Query: 301 QEHXXXXXXXXXXXXXXXXPQHMTSLHSVVLAKTLSMRHGGDRGTSSSTDEPPRVSNEQD 360
QEH PQHMTSLHSVVLAKTLSMRHGGDRGTSSSTDEPPRVSNEQD
Sbjct: 301 QEHSRYSVGSSSSKNSAAAPQHMTSLHSVVLAKTLSMRHGGDRGTSSSTDEPPRVSNEQD 360
Query: 361 TKRNQMQSVVQSAMAAKTKTNGSLVPPFRPQLGTSGSSGRGAVREVEDPETXXXXXXXXX 420
TKRNQMQSVVQSAMAAKTKTNGSLVPPFRPQLGTSGSSGRGAVREVEDPET
Sbjct: 361 TKRNQMQSVVQSAMAAKTKTNGSLVPPFRPQLGTSGSSGRGAVREVEDPETKARLKAMAA 420
Query: 421 XXXXXXXXGHLGVCKSITDSRALLCFAVLLEKGDGGMGTSVQYFSAMAIMEISRVAEHSL 480
GHLGVCKSITDSRALLCFAVLLEKGDGGMGTSVQYFSAMAIMEISRVAEHSL
Sbjct: 421 RALWKLARGHLGVCKSITDSRALLCFAVLLEKGDGGMGTSVQYFSAMAIMEISRVAEHSL 480
Query: 481 ALRQXXXXXXXXXXXXVVDQLLHIVSKGDYDDLLLPCITALGCLARTFTASENRVIAPLV 540
ALRQ VVDQLLHIVSKGDYDDLLLPCITALGCLARTFTASENRVIAPLV
Sbjct: 481 ALRQSAFKPSSPAAKAVVDQLLHIVSKGDYDDLLLPCITALGCLARTFTASENRVIAPLV 540
Query: 541 ELLDEREPPVIKEAVLALTKFACNENHLHVNHCKAIVDSGGARHLVQLVYLGDEVQIEAL 600
ELLDEREPPVIKEAVLALTKFACNENHLHVNHCKAIVDSGGARHLVQLVYLGDEVQIEAL
Sbjct: 541 ELLDEREPPVIKEAVLALTKFACNENHLHVNHCKAIVDSGGARHLVQLVYLGDEVQIEAL 600
Query: 601 ILLCFIALHVPESEELAQAGVLAVLLWASKQAHMIQDMRVDALLPDAKGRLELFQSRASR 660
ILLCFIALHVPESEELAQAGVLAVLLWASKQAHMIQDMRVDALLPDAKGRLELFQSRASR
Sbjct: 601 ILLCFIALHVPESEELAQAGVLAVLLWASKQAHMIQDMRVDALLPDAKGRLELFQSRASR 660
>Os03g0244700 Armadillo-like helical domain containing protein
Length = 646
Score = 759 bits (1961), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/665 (62%), Positives = 468/665 (70%), Gaps = 24/665 (3%)
Query: 1 MGEGVKAMLARPIQLADEVAKQCGAARCFRAECGEXXXXXXXXXXXXXXXXXXXXYDRPA 60
MGEGVKAMLA+PIQLAD+VAKQ G +CFRAEC + Y+RPA
Sbjct: 1 MGEGVKAMLAKPIQLADQVAKQAGW-QCFRAECMDLRSRAEKLAALLRQAARAELYERPA 59
Query: 61 ARIMXXXXXXXXXXXXXXXXXXXGHPRLRRLFTLSPAAGFPRTVALLDTALEDVAWLLRI 120
ARIM H RLRR FTL+P +G PRT+A+LDTALEDVAWLLRI
Sbjct: 60 ARIMADTVRALNKAAGMAARCFQSHSRLRRFFTLNPVSGLPRTLAMLDTALEDVAWLLRI 119
Query: 121 SSPRSXXXXXXXXXXXXXXXXXXXXXLRGLPNIAQNEPILFLIWDHVARLHTGGXXXXXX 180
SSP + PNIAQNEPILFLIWDH+ARLHTG
Sbjct: 120 SSPHADAGGGGDDDDYDLHGL---------PNIAQNEPILFLIWDHIARLHTGNLAARAD 170
Query: 181 XXXXXXXXXXXXQHFAKLIIEEDGVPPLLRLLKEGTDDGQEAAARALGLLGCDDESIDKL 240
HFAKLIIEEDGV PL++LLK+GTDDGQEAAA ALGLL D+ES+DKL
Sbjct: 171 AAHNLASLARDNPHFAKLIIEEDGVAPLVKLLKDGTDDGQEAAATALGLLARDEESVDKL 230
Query: 241 VQAGVCSVFAAALKDPPMRVQAAVADAIGTLADRSATCQELFAQNNAVRYLVGHLASGTI 300
+ AGVCSVFAAALK PPMRVQAAVA+++ LA + CQ+L AQ NAVR+LVGHLA+GTI
Sbjct: 231 LLAGVCSVFAAALKVPPMRVQAAVAESVAALAHHNQKCQDLLAQTNAVRHLVGHLAAGTI 290
Query: 301 QEHXXXXXXXXXXXXXXXXPQHMTSLHSVVLAKTLSMRHGGDRGTSSSTDEPPRVS---- 356
QEH +MTSLHSVVLAKTLS+ GG + S +EPP S
Sbjct: 291 QEHSRYYVAWTGSRNM-----NMTSLHSVVLAKTLSVHQGG---SGSPANEPPSSSEYPG 342
Query: 357 NEQDTKRNQMQSVVQSAMAAKTKTNGSLVPP-FRPQLGTSGSSGRGAVREVEDPETXXXX 415
++Q +NQMQSVVQSAMAAKT NG+ VPP R QL +GSSGRG+ RE EDP T
Sbjct: 343 SQQQAGKNQMQSVVQSAMAAKTTANGATVPPGCRHQLTPNGSSGRGS-REAEDPATKAHM 401
Query: 416 XXXXXXXXXXXXXGHLGVCKSITDSRALLCFAVLLEKGDGGMGTSVQYFSAMAIMEISRV 475
GH+GVCKSIT+SRALLCFA LLE+GDGG GT +Q++SAMAIMEI+RV
Sbjct: 402 KAMAAKALWKLARGHVGVCKSITESRALLCFAKLLEQGDGGAGTDLQFYSAMAIMEITRV 461
Query: 476 AEHSLALRQXXXXXXXXXXXXVVDQLLHIVSKGDYDDLLLPCITALGCLARTFTASENRV 535
AEH+LALRQ VV+QLL IV KGD DDLL PCIT+LGCL+RTFTASE RV
Sbjct: 462 AEHNLALRQSAFKPSSPAAKAVVEQLLRIVCKGDVDDLLRPCITSLGCLSRTFTASETRV 521
Query: 536 IAPLVELLDEREPPVIKEAVLALTKFACNENHLHVNHCKAIVDSGGARHLVQLVYLGDEV 595
+ PLVELLDERE PV KEAV+ALTKFAC ENHLHV+HCKAIVD GGARHLVQLVYLGD+V
Sbjct: 522 VRPLVELLDERELPVTKEAVVALTKFACTENHLHVSHCKAIVDGGGARHLVQLVYLGDQV 581
Query: 596 QIEALILLCFIALHVPESEELAQAGVLAVLLWASKQAHMIQDMRVDALLPDAKGRLELFQ 655
QIEALILLC+IALHVPE+EELAQAGVLAVLLWASKQ HM+QD+RVDALLPDAKGRLELFQ
Sbjct: 582 QIEALILLCYIALHVPENEELAQAGVLAVLLWASKQPHMVQDLRVDALLPDAKGRLELFQ 641
Query: 656 SRASR 660
SRASR
Sbjct: 642 SRASR 646
>Os09g0536200 Armadillo-like helical domain containing protein
Length = 687
Score = 512 bits (1318), Expect = e-145, Method: Compositional matrix adjust.
Identities = 300/669 (44%), Positives = 383/669 (57%), Gaps = 47/669 (7%)
Query: 3 EGVKAMLARPIQLADEVAKQCGAARCFRAECGEXXXXXXXXXXXXXXXXXXXXYDRPAAR 62
+ +K +LARPIQLA++V K A FR EC E Y+RPA R
Sbjct: 2 DDLKQILARPIQLAEQVIKWSDEAYTFRQECMELKAKVERLAGQLRQAARADLYERPARR 61
Query: 63 IMXXXXXXXXXXXXXXXXXXXGHPRLRRLFTLSPAAGFPRTVALLDTALEDVAWLLRISS 122
I H +RR+FT+ PA F + LD ++ D++WLLR+SS
Sbjct: 62 IFDDTEKALDKAMALVDKCR-AHGVVRRVFTIIPAGSFKKMANQLDNSIGDLSWLLRVSS 120
Query: 123 PRSXXXXXXXXXXXXXXXXXXXXXLRGLPNIAQNEPILFLIWDHVARLHTGGXXXXXXXX 182
S GLP IAQNEPILFLIW+ +A L+TG
Sbjct: 121 SASDDDDFDAHI--------------GLPPIAQNEPILFLIWEQIAVLYTGNLDARADAA 166
Query: 183 XXXXXXXXXXQHFAKLIIEEDGVPPLLRLLKEGTDDGQEAAARALGLLGCDDESIDKLVQ 242
++KLIIEEDGVPPLLRL+KEG +GQE AA A+GLLG D E ++++V
Sbjct: 167 ASLVSLARDNDRYSKLIIEEDGVPPLLRLVKEGKLEGQENAALAIGLLGRDPECVEQMVH 226
Query: 243 AGVCSVFAAALKDPPMRVQAAVADAIGTLADRSATCQELFAQNNAVRYLVGHLASGTIQE 302
AG C+ FA LK+ PM+VQA VA A+ LA CQ+ FA +N +R LVGHLA T+QE
Sbjct: 227 AGACTAFAKVLKEGPMKVQATVAWAVSELAANHPKCQDAFASHNVIRLLVGHLAFETVQE 286
Query: 303 HXXXXXXXXXXXXXXXXPQHMTSLHSVVLAKTLSMRHG-----GDRGTSSSTDEPPRVSN 357
H S+HSVV+ K S R D G T P
Sbjct: 287 HSKYAVTSSK-----------MSIHSVVMDKKNSTRGALIPDLMDAGEHGGTRHP---GG 332
Query: 358 EQDTKRNQMQSVVQSAMAAKTK------TNGSLVPPFRPQLGTSGSSGRGAVREVEDPET 411
+N+M S+V S MAAK +NG +V + + SG++ RG RE EDPET
Sbjct: 333 HVSQSKNEMYSLVHSTMAAKPNGSSGKVSNGGVVASKQHNVSLSGATTRG--REFEDPET 390
Query: 412 XXXXXXXXXXXXXXXXXGHLGVCKSITDSRALLCFAVLLEKGDGGMGTSVQYFSAMAIME 471
G+ +CKSIT+SRALLCFAVLLEKG+G VQY SAMA+ME
Sbjct: 391 KASMKANAAKALWHLAKGNAAICKSITESRALLCFAVLLEKGEG----DVQYNSAMALME 446
Query: 472 ISRVAEHSLALRQXXXXXXXXXXXXVVDQLLHIVSKGDYDDLLLPCITALGCLARTFTAS 531
I VAE + LR+ VVDQLL +V K +YDDLL+PCI +LGCL+RTF A+
Sbjct: 447 ICSVAEQNSDLRRSAFKPTSPAARAVVDQLLRVVDKAEYDDLLIPCIISLGCLSRTFRAT 506
Query: 532 ENRVIAPLVELLDEREPPVIKEAVLALTKFACNENHLHVNHCKAIVDSGGARHLVQLVYL 591
E R+I PLV+LLDERE V +EA L+LTKFAC EN+L V+H KAI+ +GGA+HLVQLVY
Sbjct: 507 ETRIIGPLVKLLDEREADVSREAALSLTKFACTENYLRVDHSKAIISAGGAKHLVQLVYF 566
Query: 592 GDE-VQIEALILLCFIALHVPESEELAQAGVLAVLLWASKQAHMIQDMRVDALLPDAKGR 650
++ VQ+ AL L+C+IA +VP+SEELAQA +L VL WASKQ+ M+QD +++LLP+AK R
Sbjct: 567 SEQVVQLAALALVCYIAHNVPDSEELAQAEILTVLEWASKQSFMMQDPLIESLLPEAKIR 626
Query: 651 LELFQSRAS 659
LEL+QSR S
Sbjct: 627 LELYQSRDS 635
>Os08g0548500 Armadillo-like helical domain containing protein
Length = 646
Score = 462 bits (1190), Expect = e-130, Method: Compositional matrix adjust.
Identities = 276/679 (40%), Positives = 371/679 (54%), Gaps = 58/679 (8%)
Query: 3 EGVKAMLARPIQLADEVAKQCGAARCFRAECGEXXXXXXXXXXXXXXXXXXXXYDRPAAR 62
+ +KA+LARPIQLA++V K A+ R EC + Y+RPA R
Sbjct: 2 DDLKAILARPIQLAEQVIKWAEEAQTCRQECLDLKAKVERLASLLRQAARADLYERPARR 61
Query: 63 IMXXXXXXXXXXXXXXXXXXXGHPRLRRLFTLSPAAGFPRTVALLDTALEDVAWLLRISS 122
I+ GH +RR+FT+ PA F +T LD +L D++W+LR+S+
Sbjct: 62 ILDDTGKALDKAAALLDRCR-GHGLIRRVFTIIPAGSFKKTSNQLDNSLGDLSWILRVSN 120
Query: 123 PRSXXXXXXXXXXXXXXXXXXXXXLRGLPNIAQNEPILFLIWDHVARLHTGGXXXXXXXX 182
+ GLP IAQNEPILFLIW+ +A L+TG
Sbjct: 121 YSNADDLDDDHI--------------GLPPIAQNEPILFLIWEQIAVLYTGNPEARADAA 166
Query: 183 XXXXXXXXXXQHFAKLIIEEDGVPPLLRLLKEGTDDGQEAAARALGLLGCDDESIDKLVQ 242
+ +LIIEEDGVPPLLRL+KEG+ +GQE AA A+GLLG D E ++ +V
Sbjct: 167 ASIVSLARDNDRYGRLIIEEDGVPPLLRLIKEGSSEGQETAALAIGLLGRDPECVELMVL 226
Query: 243 AGVCSVFAAALKDPPMRVQAAVADAIGTLADRSATCQELFAQNNAVRYLVGHLASGTIQE 302
AGVC+ FA LKD PM+VQ VA A+ LA CQ+ F Q+N +R LV HLA T+QE
Sbjct: 227 AGVCTAFAKILKDAPMKVQGMVAWAVSELATNHPKCQDAFLQSNVIRLLVSHLAFETVQE 286
Query: 303 HXXXXXXXXXXXXXXXXPQHMTSLHSVVLAKTLSMRHGGDRGTSSSTD------------ 350
H S+H+V++ K ++ G +S D
Sbjct: 287 HSKYAVASK------------MSIHTVLMDK----KNNGSTSSSHHHDALDAVDHAAATT 330
Query: 351 --------EPPRVSNEQDTKRNQMQSVVQSAMAAKTKTNGSLVPPFRPQLGTSGSSGRGA 402
+P + + + ++ G++ + SG+S +
Sbjct: 331 TTTTAMAAKPTGGGAASSSGAGAGSAGTGTTSSSSVSVGGTVAGTKQHNASLSGTSTKA- 389
Query: 403 VREVEDPETXXXXXXXXXXXXXXXXXGHLGVCKSITDSRALLCFAVLLEKGDGGMGTSVQ 462
RE EDPET G+ VCK+IT+SRALLC +VLLEKG V+
Sbjct: 390 -REFEDPETKAYLKANAAKALWQLAMGNAAVCKNITESRALLCLSVLLEKG----VDDVR 444
Query: 463 YFSAMAIMEISRVAEHSLALRQXXXXXXXXXXXXVVDQLLHIVSKGDYDDLLLPCITALG 522
Y SAMA+MEI VAE + LR+ VVDQLL +V K DYD+LL+PCI +LG
Sbjct: 445 YNSAMALMEICLVAEQNADLRRSAFKPTSPAARAVVDQLLRVVHKADYDELLIPCIISLG 504
Query: 523 CLARTFTASENRVIAPLVELLDEREPPVIKEAVLALTKFACNENHLHVNHCKAIVDSGGA 582
CL+RTF A+E R+I PLV LLDERE V +EA ALTKFAC EN+LHV+H KAI+ GGA
Sbjct: 505 CLSRTFRATETRIIGPLVNLLDEREADVSREAAAALTKFACTENYLHVDHSKAIIHHGGA 564
Query: 583 RHLVQLVYLGDE-VQIEALILLCFIALHVPESEELAQAGVLAVLLWASKQAHMIQDMRVD 641
+HLVQLVY ++ VQI AL+L+C+IA +VP++EELAQA +L +L WASKQA M+QD ++
Sbjct: 565 KHLVQLVYFAEQAVQIAALLLVCYIAHNVPDNEELAQAEILTLLEWASKQAAMVQDPLIE 624
Query: 642 ALLPDAKGRLELFQSRASR 660
LL +AK R+EL+QSR ++
Sbjct: 625 NLLLEAKIRMELYQSRGAK 643
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.135 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,276,913
Number of extensions: 612823
Number of successful extensions: 1745
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1718
Number of HSP's successfully gapped: 5
Length of query: 660
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 553
Effective length of database: 11,448,903
Effective search space: 6331243359
Effective search space used: 6331243359
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 159 (65.9 bits)