Os10g0147900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Armadillo-like helical domain containing protein.
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Os10g0147900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Armadillo-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43.05 | 0.308 | 9.73 | 0.441 | 0.514 | -0.416 | -0.463 | 0.481 | 0.03 | 6.01 | 29.45 | 336 | -- | -- |
| 43.01 | 0.305 | 9.73 | 0.492 | 0.53 | -0.378 | -0.416 | -- | 0.0291 | 6.04 | 29.1 | 378 | -- | -- |
| 43.51 | 0.307 | 9.73 | 0.459 | 0.516 | -0.427 | -- | 0.297 | 0.0353 | 5.96 | 29.4 | 332 | -- | -- |
| 43.43 | 0.307 | 9.73 | 0.484 | 0.537 | -0.398 | -- | -- | 0.0291 | 5.96 | 29.11 | 370 | -- | -- |
| 52.27 | 0.339 | 9.74 | 0.432 | -- | -0.0883 | -- | 0.669 | 0.0312 | -- | 27.7 | 1420 | -- | -- |
| 46.37 | 0.319 | 9.72 | 0.559 | 0.34 | -- | -0.632 | -- | 0.0572 | 6.48 | -- | -- | -- | -- |
| 47.36 | 0.322 | 9.72 | 0.55 | 0.338 | -- | -- | -- | 0.059 | 6.4 | -- | -- | -- | -- |
| 51.4 | 0.334 | 9.72 | 0.513 | -- | -0.224 | -- | -- | 0.106 | -- | 30.3 | 4222 | -- | -- |
| 49.44 | 0.327 | 9.74 | -- | 0.59 | -0.475 | -- | -- | -0.0311 | 5.91 | 29.2 | 383 | -- | -- |
| 53.29 | 0.341 | 9.73 | 0.559 | -- | -- | -- | -- | 0.0662 | -- | -- | -- | -- | -- |
| 55.35 | 0.348 | 9.74 | -- | 0.345 | -- | -- | -- | -0.00227 | 6.31 | -- | -- | -- | -- |
| 56.69 | 0.351 | 9.73 | -- | -- | -0.293 | -- | -- | 0.0509 | -- | 30.32 | 5801 | -- | -- |
| 61.54 | 0.366 | 9.74 | -- | -- | -- | -- | -- | 0.00416 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.59 | temperature | 25 | 270 | > th | dose dependent | rect. | 20 | 11 |
| 3 | 41.03 | temperature | 25 | 90 | > th | dose independent | rect. | 20 | 7 |
| 5 | 41.17 | temperature | 25 | 270 | > th | dose independent | rect. | 20 | 5 |
| 6 | 41.22 | temperature | 25 | 270 | > th | dose independent | rect. | 18 | 12 |
| 7 | 41.24 | temperature | 25 | 270 | > th | dose dependent | rect. | 22 | 2 |
| 13 | 41.33 | temperature | 25 | 270 | > th | dose dependent | rect. | 20 | 5 |
| 21 | 41.45 | temperature | 25 | 270 | > th | dose independent | rect. | 22 | 2 |
| 39 | 41.65 | temperature | 25 | 270 | > th | dose independent | sin | 13 | NA |
| 40 | 41.65 | temperature | 25 | 90 | > th | dose independent | rect. | 22 | 5 |
| 57 | 41.78 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 72 | 41.91 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 92 | 42.10 | temperature | 20 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 95 | 42.12 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 3 |
| 149 | 42.40 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 6 |
| 210 | 42.59 | temperature | 25 | 270 | < th | dose independent | rect. | 15 | 15 |
| 229 | 42.63 | temperature | 30 | 10 | < th | dose independent | rect. | 11 | 16 |
| 253 | 42.69 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 16 |
| 258 | 42.71 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 270 | 42.75 | temperature | 25 | 720 | > th | dose dependent | sin | 13 | NA |
| 272 | 42.75 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 12 |
| 277 | 42.77 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 3 |
| 287 | 42.78 | temperature | 30 | 270 | < th | dose independent | rect. | 9 | 16 |
| 299 | 42.81 | temperature | 25 | 720 | < th | dose independent | rect. | 7 | 1 |
| 338 | 42.87 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 20 | 7 |
| 351 | 42.89 | atmosphere | 1005 | 270 | < th | dose independent | rect. | 15 | 15 |
| 379 | 42.92 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 15 |
| 408 | 42.96 | humidity | 60 | 4320 | > th | dose independent | rect. | 11 | 3 |
| 421 | 42.96 | temperature | 10 | 30 | > th | dose dependent | rect. | 3 | 17 |
| 423 | 42.97 | humidity | 90 | 90 | < th | dose independent | rect. | 20 | 7 |
| 427 | 42.97 | temperature | 30 | 10 | < th | dose independent | rect. | 11 | 14 |
| 440 | 42.99 | humidity | 60 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 454 | 43.00 | temperature | 30 | 270 | < th | dose independent | rect. | 5 | 22 |
| 469 | 43.01 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 471 | 43.02 | humidity | 90 | 90 | < th | dose independent | rect. | 20 | 10 |
| 493 | 43.04 | humidity | 60 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 508 | 43.04 | atmosphere | 1010 | 90 | < th | dose dependent | rect. | 15 | 17 |
| 509 | 43.05 | temperature | 25 | 720 | > th | dose independent | rect. | 4 | 5 |
| 517 | 43.05 | radiation | 10 | 720 | < th | dose dependent | rect. | 13 | 4 |
| 539 | 43.07 | radiation | 10 | 720 | < th | dose dependent | rect. | 11 | 6 |
| 545 | 43.08 | temperature | 25 | 270 | < th | dose independent | sin | 13 | NA |
| 550 | 43.08 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 17 | 10 |
| 567 | 43.09 | temperature | 30 | 270 | < th | dose independent | rect. | 17 | 23 |
| 578 | 43.10 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 1 |
| 599 | 43.12 | radiation | 10 | 720 | > th | dose independent | rect. | 15 | 2 |
| 658 | 43.16 | atmosphere | 1010 | 10 | < th | dose dependent | rect. | 16 | 17 |
| 689 | 43.18 | radiation | 10 | 720 | < th | dose dependent | rect. | 11 | 13 |
| 734 | 43.22 | radiation | 10 | 720 | < th | dose dependent | rect. | 13 | 11 |
| 774 | 43.26 | temperature | 30 | 270 | < th | dose independent | sin | 18 | NA |
| 776 | 43.26 | temperature | 25 | 720 | < th | dose independent | rect. | 4 | 6 |
| 832 | 43.31 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 1 |
| 835 | 43.31 | humidity | 90 | 270 | < th | dose independent | rect. | 20 | 5 |
| 852 | 43.32 | temperature | 25 | 720 | > th | dose independent | rect. | 3 | 8 |
| 869 | 43.33 | radiation | 30 | 720 | > th | dose independent | rect. | 14 | 19 |
| 870 | 43.33 | temperature | 25 | 720 | > th | dose dependent | rect. | 10 | 1 |
| 881 | 43.34 | humidity | 60 | 4320 | > th | dose independent | rect. | 3 | 12 |
| 882 | 43.34 | humidity | 60 | 4320 | > th | dose independent | rect. | 1 | 14 |
| 883 | 43.34 | humidity | 60 | 4320 | > th | dose independent | rect. | 23 | 16 |
| 906 | 43.35 | temperature | 30 | 270 | > th | dose independent | rect. | 12 | 21 |
| 921 | 43.36 | temperature | 10 | 720 | > th | dose dependent | sin | 6 | NA |
| 931 | 43.37 | temperature | 30 | 270 | > th | dose independent | sin | 18 | NA |
| 936 | 43.37 | radiation | 10 | 720 | > th | dose independent | rect. | 15 | 15 |
| 955 | 43.38 | temperature | 30 | 270 | > th | dose independent | rect. | 12 | 7 |
| 959 | 43.38 | radiation | 40 | 10 | < th | dose independent | rect. | 3 | 8 |