Os03g0244700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Armadillo-like helical domain containing protein.
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Os03g0244700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Armadillo-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 265.73 | 0.766 | 6.89 | 1.77 | 3.11 | -1.37 | 0.0266 | 1.05 | 1.2 | 0.158 | 19.6 | 2053 | -- | -- |
| 266.53 | 0.76 | 6.86 | 1.91 | 3.09 | -1.62 | -0.0463 | -- | 1.24 | 0.161 | 19.27 | 2060 | -- | -- |
| 265.17 | 0.758 | 6.89 | 1.76 | 3.11 | -1.39 | -- | 1.02 | 1.2 | 0.15 | 19.4 | 2077 | -- | -- |
| 266.54 | 0.76 | 6.86 | 1.91 | 3.1 | -1.62 | -- | -- | 1.24 | 0.164 | 19.26 | 2060 | -- | -- |
| 827.78 | 1.34 | 6.87 | 2.05 | -- | -1.62 | -- | 0.966 | 1 | -- | 21.4 | 870 | -- | -- |
| 313.15 | 0.83 | 6.79 | 2.63 | 3.17 | -- | -0.0108 | -- | 1.56 | 0.131 | -- | -- | -- | -- |
| 313.15 | 0.829 | 6.79 | 2.63 | 3.17 | -- | -- | -- | 1.56 | 0.131 | -- | -- | -- | -- |
| 776.12 | 1.3 | 6.86 | 2.15 | -- | -2.04 | -- | -- | 0.91 | -- | 25.1 | 923 | -- | -- |
| 296.41 | 0.802 | 6.96 | -- | 3.14 | -2.38 | -- | -- | 0.798 | 0.124 | 16.9 | 47520 | -- | -- |
| 945.49 | 1.44 | 6.72 | 2.74 | -- | -- | -- | -- | 1.6 | -- | -- | -- | -- | -- |
| 496.03 | 1.04 | 6.85 | -- | 3.21 | -- | -- | -- | 1.26 | 0.177 | -- | -- | -- | -- |
| 884.2 | 1.38 | 6.98 | -- | -- | -2.41 | -- | -- | 0.47 | -- | 24.8 | 903 | -- | -- |
| 1142.9 | 1.58 | 6.79 | -- | -- | -- | -- | -- | 1.3 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 258.65 | temperature | 20 | 90 | > th | dose independent | rect. | 18 | 12 |
| 9 | 264.02 | temperature | 20 | 270 | > th | dose independent | sin | 12 | NA |
| 10 | 264.24 | radiation | 10 | 4320 | < th | dose dependent | rect. | 22 | 7 |
| 13 | 265.02 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 20 | 266.03 | temperature | 20 | 270 | < th | dose independent | rect. | 15 | 16 |
| 31 | 266.55 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 6 |
| 32 | 266.66 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 4 |
| 34 | 266.67 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 4 |
| 44 | 266.98 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 2 |
| 53 | 267.19 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 75 | 267.59 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 79 | 267.65 | temperature | 20 | 4320 | < th | dose independent | rect. | 9 | 14 |
| 81 | 267.76 | temperature | 20 | 720 | > th | dose independent | sin | 15 | NA |
| 86 | 267.84 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 3 |
| 90 | 267.87 | temperature | 20 | 4320 | > th | dose independent | rect. | 9 | 14 |
| 114 | 268.23 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 126 | 268.37 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 3 |
| 183 | 269.09 | radiation | 10 | 4320 | < th | dose independent | rect. | 21 | 8 |
| 216 | 269.45 | temperature | 20 | 720 | > th | dose independent | rect. | 11 | 17 |
| 233 | 269.59 | temperature | 20 | 4320 | < th | dose dependent | rect. | 19 | 4 |
| 238 | 269.62 | wind | 3 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 249 | 269.77 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 258 | 269.91 | temperature | 20 | 270 | < th | dose independent | sin | 12 | NA |
| 268 | 270.01 | radiation | 40 | 14400 | < th | dose dependent | rect. | 21 | 8 |
| 281 | 270.13 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 16 |
| 286 | 270.16 | temperature | 20 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 287 | 270.18 | temperature | 20 | 1440 | < th | dose independent | rect. | 15 | 13 |
| 307 | 270.37 | temperature | 20 | 4320 | > th | dose independent | sin | 19 | NA |
| 319 | 270.50 | temperature | 20 | 4320 | < th | dose independent | sin | 20 | NA |
| 342 | 270.69 | temperature | 20 | 1440 | < th | dose independent | sin | 13 | NA |
| 371 | 270.94 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 19 |
| 391 | 271.08 | humidity | 50 | 43200 | < th | dose dependent | rect. | 6 | 3 |
| 422 | 271.23 | humidity | 50 | 43200 | < th | dose dependent | rect. | 20 | 13 |
| 423 | 271.24 | humidity | 50 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 426 | 271.26 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 11 | 18 |
| 435 | 271.31 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 13 |
| 459 | 271.45 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 21 | 18 |
| 469 | 271.51 | temperature | 20 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 580 | 272.06 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 18 | 20 |
| 592 | 272.10 | wind | 3 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 618 | 272.21 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 21 | 17 |
| 638 | 272.33 | humidity | 50 | 14400 | > th | dose independent | rect. | 19 | 2 |
| 652 | 272.38 | atmosphere | 995 | 43200 | < th | dose independent | sin | 6 | NA |
| 699 | 272.59 | wind | 5 | 4320 | < th | dose dependent | rect. | 8 | 1 |
| 723 | 272.67 | radiation | 10 | 1440 | < th | dose independent | rect. | 12 | 6 |
| 725 | 272.68 | atmosphere | 995 | 43200 | > th | dose independent | sin | 6 | NA |
| 729 | 272.70 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 19 |
| 735 | 272.71 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 19 |
| 832 | 273.08 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 833 | 273.09 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 848 | 273.13 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 850 | 273.14 | wind | 1 | 14400 | < th | dose independent | rect. | 23 | 3 |
| 879 | 273.19 | radiation | 10 | 720 | < th | dose independent | rect. | 14 | 7 |
| 894 | 273.23 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 12 | 14 |
| 925 | 273.34 | wind | 3 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 939 | 273.38 | wind | 1 | 43200 | < th | dose dependent | rect. | 5 | 20 |
| 947 | 273.42 | radiation | 1 | 1440 | > th | dose independent | rect. | 10 | 4 |