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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0536200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Armadillo-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.99 (0.0292) R2 : 0.000878
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0389 (0.0614) R2dN8 : 0.00113 R2N8 : 0.000878
σ : 0.549
deviance : 138.47
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
126.14 0.528 2.96 -0.222 0.184 0.408 0.316 1.07 0.0797 11.3 82.33 80 -- --
128.98 0.529 2.98 -0.152 0.206 0.431 -0.0436 -- 0.0862 10.6 81.77 46 -- --
126.32 0.523 2.96 -0.205 0.153 0.391 -- 0.949 0.0811 10.5 84.71 104 -- --
128.73 0.528 2.97 -0.162 0.139 0.449 -- -- 0.11 9.31 88.62 96 -- --
127.29 0.525 2.97 -0.191 -- 0.408 -- 0.926 0.0811 -- 87.6 140 -- --
133.59 0.542 2.98 -0.117 0.287 -- 0.303 -- 0.0213 5.38 -- -- -- --
133.79 0.542 2.99 -0.116 0.291 -- -- -- 0.0201 5.66 -- -- -- --
128.48 0.528 2.97 -0.172 -- 0.723 -- -- 0.101 -- 93.22 145 -- --
129.36 0.53 2.96 -- 0.128 0.451 -- -- 0.121 8.99 89.63 110 -- --
138.17 0.549 2.99 -0.106 -- -- -- -- 0.0271 -- -- -- -- --
134.14 0.542 2.98 -- 0.289 -- -- -- 0.033 5.67 -- -- -- --
129.21 0.529 2.97 -- -- 0.728 -- -- 0.118 -- 93.34 150 -- --
138.47 0.549 2.99 -- -- -- -- -- 0.0389 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 122.53 atmosphere 1005.0 90 > th dose independent rect. 4 2
3 123.05 temperature 20.0 90 > th dose dependent rect. 4 2
4 123.13 temperature 20.0 90 > th dose independent rect. 4 2
5 123.20 wind 7.0 1440 < th dose independent rect. 5 1
7 123.20 temperature 10.0 1440 > th dose independent rect. 5 1
10 123.20 temperature 30.0 1440 < th dose independent rect. 5 1
14 123.20 humidity 50.0 1440 > th dose independent rect. 5 1
23 123.20 atmosphere 995.0 1440 > th dose independent rect. 5 1
24 123.20 atmosphere 1015.0 1440 < th dose independent rect. 5 1
25 123.20 radiation 20.0 1440 < th dose independent rect. 5 1
34 123.20 temperature 10.0 1440 > th dose independent rect. 6 23
44 124.09 temperature 20.0 10 > th dose dependent rect. 4 3
45 124.18 atmosphere 1005.0 270 > th dose independent rect. 1 5
53 124.62 wind 3.0 90 < th dose dependent rect. 4 2
54 124.77 temperature 20.0 10 > th dose independent rect. 4 3
55 124.79 atmosphere 1005.0 10 > th dose independent rect. 4 3
56 124.79 radiation 1.0 10 > th dose dependent rect. 5 1
69 124.80 humidity 90.0 90 > th dose dependent rect. 4 23
73 124.87 humidity 90.0 90 > th dose dependent rect. 4 19
74 124.88 humidity 90.0 90 > th dose dependent rect. 4 21
83 125.13 humidity 80.0 10 > th dose independent rect. 4 11
84 125.14 humidity 80.0 90 > th dose dependent rect. 4 2
87 125.18 atmosphere 995.0 90 > th dose dependent rect. 4 2
88 125.18 humidity 80.0 90 > th dose dependent rect. 4 11
90 125.19 wind 3.0 10 < th dose dependent rect. 5 1
107 125.33 humidity 80.0 10 > th dose dependent rect. 4 13
110 125.36 radiation 1.0 90 > th dose dependent rect. 4 2
129 125.42 humidity 90.0 90 > th dose independent rect. 4 3
149 125.52 wind 1.0 90 < th dose independent rect. 4 2
153 125.58 humidity 80.0 90 > th dose dependent rect. 4 17
175 125.73 humidity 50.0 10 > th dose dependent rect. 12 19
179 125.75 humidity 80.0 10 > th dose dependent rect. 4 18
196 125.83 humidity 90.0 90 > th dose independent rect. 4 19
216 125.91 humidity 80.0 10 > th dose dependent rect. 4 23
226 125.96 wind 5.0 10 < th dose independent rect. 18 10
227 125.96 humidity 80.0 90 > th dose dependent rect. 23 23
245 126.00 humidity 80.0 90 > th dose dependent rect. 10 23
253 126.03 humidity 80.0 90 > th dose dependent rect. 17 22
256 126.05 precipitation 0.1 90 < th dose independent rect. 6 22
259 126.05 precipitation 0.1 90 < th dose dependent rect. 6 22
263 126.07 humidity 80.0 90 > th dose dependent rect. 11 20
273 126.11 humidity 80.0 30 > th dose dependent sin 2 NA
279 126.12 wind 1.0 90 > th dose independent rect. 6 22
281 126.13 humidity 90.0 90 > th dose independent rect. 4 5
292 126.16 wind 1.0 90 > th dose independent rect. 21 14
308 126.21 humidity 80.0 30 > th dose dependent rect. 13 19
312 126.22 wind 9.0 90 < th dose independent rect. 6 22
315 126.22 wind 3.0 90 < th dose dependent rect. 13 18
342 126.30 humidity 90.0 270 > th dose dependent rect. 1 23
349 126.32 humidity 80.0 90 > th dose dependent rect. 13 23
356 126.34 humidity 80.0 90 > th dose dependent no NA NA
365 126.37 wind 1.0 90 < th dose independent rect. 23 8
379 126.39 humidity 90.0 90 < th dose independent rect. 13 23
380 126.39 temperature 20.0 10 > th dose dependent rect. 2 5
381 126.39 radiation 10.0 90 < th dose dependent rect. 4 14
384 126.40 wind 1.0 10 > th dose independent rect. 7 21
392 126.41 humidity 80.0 30 > th dose dependent rect. 19 23
403 126.43 humidity 80.0 30 > th dose dependent rect. 21 23
410 126.46 wind 1.0 90 > th dose independent sin 7 NA
423 126.48 wind 7.0 720 < th dose independent rect. 17 14
429 126.49 precipitation 0.1 90 < th dose independent rect. 4 2
431 126.49 precipitation 0.1 90 < th dose dependent rect. 4 2
444 126.52 humidity 60.0 90 > th dose dependent sin 8 NA
447 126.53 wind 5.0 90 < th dose independent rect. 17 11
465 126.55 wind 9.0 90 < th dose independent rect. 4 2
466 126.55 temperature 10.0 90 > th dose independent rect. 4 2
468 126.55 temperature 30.0 90 < th dose independent rect. 4 2
469 126.55 humidity 50.0 90 > th dose independent rect. 4 2
473 126.55 atmosphere 1010.0 90 < th dose independent rect. 4 2
475 126.55 radiation 20.0 90 < th dose independent rect. 4 2
478 126.55 temperature 10.0 90 > th dose independent rect. 6 22
500 126.58 atmosphere 1005.0 10 > th dose independent rect. 24 7
503 126.59 atmosphere 1005.0 270 > th dose independent rect. 1 15
509 126.60 atmosphere 1000.0 270 > th dose dependent rect. 1 5
512 126.61 humidity 50.0 1440 > th dose independent rect. 16 1
519 126.62 radiation 40.0 1440 < th dose independent rect. 5 3
531 126.64 humidity 80.0 30 > th dose independent sin 3 NA
532 126.64 humidity 80.0 10 > th dose independent rect. 4 4
536 126.64 wind 5.0 10 > th dose dependent rect. 17 13
554 126.66 wind 1.0 90 < th dose independent rect. 4 21
566 126.67 atmosphere 1005.0 10 > th dose independent rect. 24 9
571 126.68 wind 1.0 90 < th dose independent rect. 14 17
615 126.71 humidity 90.0 270 > th dose dependent rect. 18 13
620 126.72 humidity 90.0 90 < th dose independent rect. 18 23
634 126.74 humidity 90.0 90 < th dose independent sin 6 NA
637 126.74 humidity 90.0 270 > th dose dependent sin 9 NA
651 126.75 radiation 40.0 90 < th dose dependent rect. 4 2
653 126.75 temperature 20.0 10 > th dose dependent rect. 24 7
679 126.77 wind 3.0 10 < th dose independent rect. 4 3
733 126.80 humidity 90.0 90 < th dose independent rect. 18 18
764 126.82 wind 1.0 90 > th dose independent rect. 13 23
776 126.83 wind 1.0 90 < th dose independent rect. 20 11
797 126.84 radiation 40.0 90 < th dose dependent rect. 12 18
823 126.86 humidity 90.0 90 > th dose independent rect. 4 21
840 126.87 humidity 90.0 90 < th dose independent rect. 21 14
882 126.91 humidity 90.0 30 < th dose dependent sin 8 NA
890 126.92 radiation 10.0 90 < th dose independent rect. 4 11
908 126.93 radiation 20.0 90 < th dose dependent rect. 4 11
914 126.94 wind 1.0 90 < th dose independent sin 8 NA
928 126.95 temperature 20.0 270 > th dose independent rect. 1 5
936 126.96 humidity 90.0 90 > th dose independent rect. 4 23
949 126.97 temperature 15.0 270 > th dose dependent rect. 1 5
962 126.99 radiation 10.0 90 < th dose independent rect. 4 13
988 127.00 wind 3.0 270 < th dose dependent rect. 1 5