BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0147200 Os10g0147200|AK111104
         (102 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0147200  Similar to Thaumatin-like protein                   135   8e-33
Os03g0244200  Similar to Thaumatin-like protein                    91   2e-19
Os06g0716200  Thaumatin, pathogenesis-related family protein       74   2e-14
Os09g0536300  Similar to Thaumatin-like protein                    73   4e-14
Os03g0243900  Similar to Thaumatin-like protein                    66   6e-12

>Os10g0147200 Similar to Thaumatin-like protein
          Length = 102

 Score =  135 bits (339), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 65/65 (100%), Positives = 65/65 (100%)

Query: 1  EFFKAACPRAYSYAYDDSTSTFTCAAGATDYAITFCPAAPTSVKSSGQNPQAAGLQQLND 60
          EFFKAACPRAYSYAYDDSTSTFTCAAGATDYAITFCPAAPTSVKSSGQNPQAAGLQQLND
Sbjct: 1  EFFKAACPRAYSYAYDDSTSTFTCAAGATDYAITFCPAAPTSVKSSGQNPQAAGLQQLND 60

Query: 61 TMVYF 65
          TMVYF
Sbjct: 61 TMVYF 65



>Os03g0244200 Similar to Thaumatin-like protein
          Length = 332

 Score = 90.9 bits (224), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 45/65 (69%), Positives = 51/65 (78%), Gaps = 1/65 (1%)

Query: 1   EFFKAACPRAYSYAYDDSTSTFTCAAGATDYAITFCPAAPTSVKSSGQNPQAAGLQQLND 60
           +FFK ACPRAYSYAYDDSTSTFTC AG T+YAITFCP+  +   S G+NPQAAG+   ND
Sbjct: 232 QFFKNACPRAYSYAYDDSTSTFTCTAG-TNYAITFCPSTTSGKYSGGENPQAAGVPSTND 290

Query: 61  TMVYF 65
           TMV  
Sbjct: 291 TMVVL 295



>Os06g0716200 Thaumatin, pathogenesis-related family protein
          Length = 316

 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/64 (59%), Positives = 44/64 (68%), Gaps = 2/64 (3%)

Query: 1   EFFKAACPRAYSYAYDDSTSTFTCAAGATDYAITFCPAAPTSVKSSGQNPQAAGLQQLND 60
            FFK ACPRAYSYAYDD+TSTFTCAA    Y + FCP   +S+KS G NP+A GL     
Sbjct: 225 RFFKGACPRAYSYAYDDATSTFTCAAAGGGYDVVFCPGM-SSLKSGG-NPEAVGLPPTYS 282

Query: 61  TMVY 64
           TM +
Sbjct: 283 TMAF 286



>Os09g0536300 Similar to Thaumatin-like protein
          Length = 330

 Score = 73.2 bits (178), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 37/70 (52%), Positives = 47/70 (67%), Gaps = 5/70 (7%)

Query: 1   EFFKAACPRAYSYAYDDSTSTFTCAAGATDYAITFCP---AAPTSVKSSGQNPQAA--GL 55
           +FFK ACPRAYSYAYDD+TSTFTCA+G   Y + FCP   +  +SV     NP A+  GL
Sbjct: 211 QFFKNACPRAYSYAYDDATSTFTCASGTASYLVVFCPIISSLKSSVGGGATNPSASGTGL 270

Query: 56  QQLNDTMVYF 65
             +NDT+ + 
Sbjct: 271 PLINDTVSFL 280



>Os03g0243900 Similar to Thaumatin-like protein
          Length = 336

 Score = 65.9 bits (159), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 32/46 (69%), Positives = 37/46 (80%), Gaps = 1/46 (2%)

Query: 1   EFFKAACPRAYSYAYDDSTSTFTCAAGATDYAITFCPAAPTSVKSS 46
           + FK+ACPR+YSYAYDD TSTFTC AG  DY ITFCP A  S+KS+
Sbjct: 210 QVFKSACPRSYSYAYDDPTSTFTC-AGGRDYTITFCPVATPSLKSA 254



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.127    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,134,281
Number of extensions: 61060
Number of successful extensions: 277
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 275
Number of HSP's successfully gapped: 8
Length of query: 102
Length of database: 17,035,801
Length adjustment: 70
Effective length of query: 32
Effective length of database: 13,380,821
Effective search space: 428186272
Effective search space used: 428186272
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 149 (62.0 bits)