Os03g0244200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Thaumatin-like protein.
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Os03g0244200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Thaumatin-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 192.21 | 0.651 | 9.62 | 2.1 | 1.37 | -2.82 | -0.33 | 2.44 | 0.445 | 0.355 | 24.8 | 773 | 10 | -- |
| 200.74 | 0.66 | 9.57 | 2.58 | 1.33 | -2.75 | 0.583 | -- | 0.575 | 0.392 | 24.8 | 767 | 9.94 | -- |
| 192.15 | 0.646 | 9.62 | 2.11 | 1.28 | -2.8 | -- | 2.31 | 0.443 | 0.244 | 24.73 | 810 | 10.2 | -- |
| 201.9 | 0.662 | 9.57 | 2.58 | 1.38 | -2.75 | -- | -- | 0.588 | 0.179 | 24.74 | 767 | 10.2 | -- |
| 246 | 0.73 | 9.63 | 1.95 | -- | -3.01 | -- | 4.94 | 0.173 | -- | 25.6 | 1019 | 9.4 | -- |
| 376.84 | 0.91 | 9.42 | 3.16 | 1.24 | -- | 0.273 | -- | 1.31 | 22 | -- | -- | -- | -- |
| 377.11 | 0.909 | 9.42 | 3.15 | 1.24 | -- | -- | -- | 1.31 | 21.9 | -- | -- | -- | -- |
| 240.73 | 0.723 | 9.56 | 2.72 | -- | -2.9 | -- | -- | 0.536 | -- | 25.56 | 962 | 8.11 | -- |
| 369.23 | 0.895 | 9.62 | -- | 1.67 | -3.12 | -- | -- | 0.349 | 23.7 | 24.2 | 659 | 9.74 | -- |
| 468.94 | 1.01 | 9.39 | 3.17 | -- | -- | -- | -- | 1.31 | -- | -- | -- | -- | -- |
| 638.78 | 1.18 | 9.5 | -- | 1.25 | -- | -- | -- | 0.955 | 22.1 | -- | -- | -- | -- |
| 415.1 | 0.949 | 9.63 | -- | -- | -3.22 | -- | -- | 0.332 | -- | 24.7 | 937 | 8.22 | -- |
| 733.21 | 1.26 | 9.47 | -- | -- | -- | -- | -- | 0.955 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 194.04 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 9 |
| 5 | 197.06 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 6 |
| 7 | 197.32 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 9 |
| 8 | 197.62 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 9 |
| 12 | 198.72 | temperature | 25 | 720 | < th | dose independent | sin | 16 | NA |
| 21 | 200.14 | temperature | 25 | 720 | > th | dose independent | sin | 16 | NA |
| 32 | 201.66 | temperature | 20 | 720 | > th | dose dependent | sin | 15 | NA |
| 83 | 207.96 | temperature | 25 | 720 | < th | dose independent | rect. | 13 | 19 |
| 212 | 217.33 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 9 |
| 369 | 226.86 | temperature | 30 | 720 | < th | dose dependent | sin | 16 | NA |
| 597 | 236.79 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 9 |
| 600 | 236.83 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 16 |
| 601 | 236.84 | temperature | 25 | 270 | < th | dose dependent | rect. | 14 | 18 |
| 649 | 238.64 | temperature | 25 | 720 | > th | dose independent | rect. | 4 | 22 |
| 661 | 239.00 | temperature | 25 | 720 | < th | dose independent | rect. | 5 | 21 |
| 668 | 239.18 | temperature | 25 | 720 | < th | dose independent | rect. | 3 | 23 |
| 676 | 239.51 | temperature | 25 | 720 | < th | dose independent | no | NA | NA |
| 774 | 241.86 | temperature | 25 | 720 | > th | dose independent | no | NA | NA |
| 776 | 242.00 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 23 |
| 781 | 242.05 | temperature | 25 | 720 | < th | dose independent | rect. | 1 | 23 |
| 894 | 245.89 | temperature | 30 | 270 | < th | dose dependent | sin | 12 | NA |
| 974 | 248.09 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 1 |