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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0716200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Thaumatin, pathogenesis-related family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.37 (0.0249) R2 : 0.00713
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0951 (0.0525) R2dN8 : 0.00921 R2N8 : 0.00713
σ : 0.47
deviance : 101.33
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
94.41 0.457 3.34 0.242 0.392 0.353 -1.62 -1.72 0.154 10.8 0.04568 117 -- --
98.15 0.461 3.34 0.189 0.416 0.399 0.203 -- 0.16 11.5 0.05997 151 -- --
96.81 0.458 3.34 0.211 0.412 0.36 -- -0.531 0.168 10.8 0.009102 144 -- --
98.31 0.462 3.35 0.184 0.432 0.36 -- -- 0.146 11 0.0474 126 -- --
97.57 0.46 3.37 0.126 -- 0.202 -- -0.581 0.0951 -- 0.17 564 -- --
98.24 0.465 3.37 0.0975 0.203 -- -0.521 -- 0.0992 4.95 -- -- -- --
98.89 0.466 3.37 0.0993 0.203 -- -- -- 0.102 5.46 -- -- -- --
98.62 0.463 3.37 0.106 -- 0.244 -- -- 0.118 -- 12.53 605 -- --
98.54 0.462 3.37 -- 0.332 0.245 -- -- 0.104 9.88 0.008653 125 -- --
101.03 0.47 3.37 0.106 -- -- -- -- 0.107 -- -- -- -- --
99.15 0.466 3.37 -- 0.204 -- -- -- 0.0908 5.44 -- -- -- --
98.9 0.463 3.37 -- -- 0.234 -- -- 0.102 -- 9.011 592 -- --
101.33 0.47 3.37 -- -- -- -- -- 0.0951 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 82.46 wind 1.0 30 < th dose independent rect. 2 1
2 82.54 wind 3.0 30 < th dose dependent rect. 2 1
3 82.54 atmosphere 1015.0 30 < th dose dependent rect. 2 1
4 82.56 atmosphere 1005.0 10 > th dose dependent rect. 2 2
6 82.59 temperature 25.0 30 < th dose independent rect. 2 1
14 82.64 temperature 10.0 30 > th dose independent rect. 2 1
17 82.64 humidity 50.0 30 > th dose independent rect. 2 1
20 82.64 atmosphere 995.0 30 > th dose independent rect. 2 1
21 82.64 atmosphere 1010.0 30 < th dose independent rect. 2 1
23 82.64 radiation 1.0 30 < th dose independent rect. 2 1
28 82.64 precipitation 0.1 30 < th dose independent rect. 2 1
29 82.64 temperature 10.0 30 > th dose independent rect. 3 23
30 82.64 radiation 1.0 30 < th dose dependent rect. 2 1
35 82.64 precipitation 0.1 30 < th dose dependent rect. 2 1
36 82.65 temperature 10.0 30 > th dose dependent rect. 2 1
38 82.67 humidity 50.0 30 > th dose dependent rect. 2 1
45 82.76 temperature 30.0 30 < th dose dependent rect. 2 1
46 82.77 atmosphere 995.0 30 > th dose dependent rect. 2 1
52 82.88 atmosphere 1005.0 30 > th dose independent rect. 2 1
60 83.18 wind 9.0 30 < th dose independent rect. 3 23
69 83.41 wind 1.0 30 > th dose independent rect. 2 1
114 85.40 atmosphere 995.0 30 > th dose independent rect. 3 23
118 86.58 humidity 90.0 90 < th dose independent rect. 2 1
123 86.80 humidity 90.0 90 < th dose independent rect. 2 3
133 87.40 precipitation 0.1 30 < th dose independent rect. 3 23
134 87.40 precipitation 0.1 30 < th dose dependent rect. 3 23
141 87.80 temperature 25.0 90 > th dose dependent rect. 1 3
156 88.45 radiation 1.0 43200 < th dose dependent rect. 3 1
160 88.67 precipitation 0.1 720 < th dose independent rect. 15 8
161 88.67 precipitation 0.1 720 < th dose dependent rect. 15 8
191 89.09 temperature 10.0 720 > th dose independent rect. 15 8
192 89.09 temperature 10.0 720 > th dose independent rect. 23 16
197 89.18 atmosphere 995.0 720 > th dose independent rect. 23 16
201 89.21 wind 9.0 1440 < th dose independent rect. 3 1
202 89.21 temperature 10.0 1440 > th dose independent rect. 3 1
205 89.21 temperature 30.0 1440 < th dose independent rect. 3 1
209 89.21 humidity 50.0 1440 > th dose independent rect. 3 1
218 89.21 atmosphere 995.0 1440 > th dose independent rect. 3 1
219 89.21 radiation 1.0 1440 < th dose independent rect. 3 1
239 89.21 temperature 10.0 1440 > th dose independent rect. 4 23
242 89.21 radiation 1.0 1440 < th dose dependent rect. 3 1
262 89.31 temperature 10.0 720 > th dose independent rect. 3 8
263 89.31 atmosphere 995.0 720 > th dose independent rect. 3 8
264 89.31 temperature 10.0 720 > th dose independent rect. 11 16
265 89.32 wind 9.0 720 < th dose independent rect. 3 8
269 89.40 humidity 50.0 30 > th dose independent rect. 3 23
274 89.60 humidity 50.0 720 > th dose independent rect. 3 8
285 89.80 precipitation 0.1 720 < th dose independent rect. 11 16
286 89.80 precipitation 0.1 720 < th dose dependent rect. 11 16
292 89.96 atmosphere 1015.0 720 < th dose independent rect. 3 8
304 90.32 humidity 90.0 90 < th dose dependent rect. 2 1
305 90.33 precipitation 0.1 720 < th dose independent rect. 3 8
306 90.33 precipitation 0.1 720 < th dose dependent rect. 3 8
312 90.60 precipitation 0.1 720 < th dose independent rect. 23 16
313 90.60 precipitation 0.1 720 < th dose dependent rect. 23 16
321 90.83 humidity 90.0 90 < th dose dependent rect. 2 3
324 90.92 humidity 90.0 10 < th dose dependent rect. 3 2
331 90.98 atmosphere 995.0 720 > th dose independent rect. 15 8
332 91.02 radiation 40.0 720 < th dose independent rect. 15 8
334 91.07 wind 5.0 30 < th dose dependent rect. 2 3
336 91.10 atmosphere 995.0 720 > th dose independent rect. 11 16
341 91.16 atmosphere 1015.0 30 < th dose independent rect. 3 23
360 91.35 wind 1.0 720 > th dose independent rect. 15 8
387 91.54 wind 9.0 720 < th dose independent rect. 15 8
395 91.59 atmosphere 1000.0 10 > th dose independent rect. 14 12
398 91.60 temperature 10.0 30 > th dose dependent rect. 3 23
407 91.66 radiation 40.0 30 < th dose independent rect. 14 12
408 91.67 wind 9.0 720 < th dose dependent rect. 2 1
409 91.68 temperature 25.0 720 > th dose dependent rect. 5 3
430 91.80 humidity 60.0 10 > th dose independent rect. 14 12
437 91.87 humidity 80.0 90 < th dose dependent rect. 24 3
438 91.87 humidity 80.0 90 < th dose dependent rect. 24 5
479 91.99 radiation 1.0 10 < th dose dependent rect. 2 12
483 92.02 atmosphere 1015.0 1440 < th dose independent rect. 3 1
512 92.13 wind 1.0 10 < th dose independent rect. 13 14
514 92.14 atmosphere 1000.0 720 > th dose independent rect. 14 1
579 92.20 radiation 1.0 10 < th dose independent rect. 2 12
583 92.22 wind 9.0 1440 < th dose independent rect. 3 3
584 92.22 temperature 10.0 1440 > th dose independent rect. 3 3
587 92.22 temperature 30.0 1440 < th dose independent rect. 3 3
591 92.22 humidity 50.0 1440 > th dose independent rect. 3 3
600 92.22 atmosphere 995.0 1440 > th dose independent rect. 3 3
601 92.22 radiation 20.0 1440 < th dose independent rect. 3 3
610 92.22 temperature 10.0 1440 > th dose independent rect. 6 21
620 92.24 precipitation 0.1 10 < th dose independent rect. 2 12
621 92.24 precipitation 0.1 10 < th dose dependent rect. 2 12
626 92.27 wind 9.0 10 < th dose independent rect. 14 12
630 92.29 temperature 10.0 10 > th dose independent rect. 2 12
632 92.29 temperature 10.0 10 > th dose independent rect. 14 12
633 92.29 atmosphere 995.0 10 > th dose independent rect. 2 12
634 92.29 atmosphere 1015.0 10 < th dose independent rect. 2 12
635 92.29 radiation 1.0 10 < th dose dependent rect. 2 10
643 92.32 radiation 1.0 10 < th dose dependent rect. 2 6
661 92.35 atmosphere 1000.0 10 > th dose independent rect. 16 10
662 92.37 precipitation 0.1 10 < th dose independent rect. 14 12
664 92.37 precipitation 0.1 10 < th dose dependent rect. 14 12
669 92.40 temperature 25.0 720 > th dose independent rect. 5 4
701 92.43 precipitation 0.1 720 < th dose independent rect. 14 1
703 92.43 humidity 50.0 10 > th dose independent rect. 2 12
704 92.43 precipitation 0.1 720 < th dose dependent rect. 14 1
709 92.45 atmosphere 995.0 720 > th dose independent rect. 3 23
714 92.46 radiation 40.0 10 < th dose dependent rect. 14 12
716 92.47 wind 1.0 10 < th dose independent rect. 6 21
740 92.49 radiation 1.0 10 < th dose independent rect. 2 10
743 92.49 wind 9.0 30 < th dose dependent rect. 3 23
744 92.50 temperature 10.0 720 > th dose independent rect. 14 1
745 92.50 atmosphere 1015.0 720 < th dose independent rect. 14 1
746 92.50 temperature 10.0 720 > th dose independent rect. 15 23
747 92.51 temperature 10.0 1440 > th dose independent rect. 3 12
750 92.51 temperature 10.0 1440 > th dose independent rect. 15 12
754 92.52 radiation 1.0 10 < th dose independent rect. 2 6
759 92.53 wind 1.0 30 > th dose dependent rect. 2 1
766 92.58 precipitation 0.1 720 < th dose independent rect. 2 1
767 92.58 precipitation 0.1 720 < th dose dependent rect. 2 1
779 92.63 humidity 50.0 30 > th dose independent rect. 5 21
780 92.64 wind 1.0 720 > th dose independent rect. 14 1
789 92.66 wind 9.0 720 < th dose independent rect. 23 16
801 92.71 radiation 30.0 10 < th dose dependent rect. 16 10
803 92.75 wind 9.0 720 < th dose independent rect. 14 1
806 92.76 radiation 1.0 720 < th dose dependent rect. 18 9
812 92.77 atmosphere 995.0 720 > th dose independent rect. 15 23
816 92.78 atmosphere 1000.0 720 > th dose independent rect. 21 18
833 92.80 radiation 30.0 10 < th dose independent rect. 16 10
834 92.80 precipitation 0.1 10 < th dose independent rect. 2 14
841 92.80 precipitation 0.1 10 < th dose dependent rect. 2 14
842 92.81 wind 9.0 10 < th dose independent rect. 16 10
850 92.84 humidity 50.0 10 > th dose independent rect. 16 10
851 92.85 temperature 10.0 10 > th dose independent rect. 16 10
853 92.85 temperature 10.0 10 > th dose independent rect. 2 14
855 92.85 atmosphere 1015.0 10 < th dose independent rect. 2 14
867 92.90 wind 9.0 30 < th dose independent rect. 2 12
871 92.93 precipitation 0.1 10 < th dose independent rect. 16 10
874 92.93 precipitation 0.1 10 < th dose dependent rect. 16 10
878 92.95 atmosphere 995.0 10 > th dose independent rect. 2 14
884 92.97 radiation 10.0 10 < th dose independent rect. 14 12
889 93.00 wind 1.0 10 < th dose independent rect. 17 10
896 93.02 temperature 10.0 1440 > th dose independent rect. 17 10
900 93.02 radiation 30.0 1440 < th dose independent rect. 17 10
906 93.02 temperature 10.0 1440 > th dose independent rect. 3 14
919 93.03 radiation 20.0 10 < th dose dependent rect. 14 12
937 93.10 temperature 30.0 10 < th dose independent rect. 14 12
943 93.12 radiation 1.0 720 > th dose independent rect. 14 1
953 93.18 humidity 50.0 10 > th dose independent rect. 2 14
968 93.23 temperature 25.0 30 > th dose dependent rect. 24 11
971 93.25 atmosphere 1000.0 720 > th dose independent rect. 3 6
974 93.26 precipitation 0.1 720 < th dose independent rect. 3 23
975 93.26 precipitation 0.1 720 < th dose dependent rect. 3 23
976 93.27 temperature 25.0 270 > th dose independent rect. 19 9
984 93.31 temperature 30.0 30 < th dose independent rect. 5 21