Os03g0243900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Thaumatin-like protein.
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Os03g0243900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Thaumatin-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1120.68 | 1.57 | 7.81 | -9.49 | 2.16 | 5.56 | -3.15 | -8.63 | -1.87 | 16.9 | 23.37 | 1274 | 14.7 | -- |
| 1156.64 | 1.58 | 7.54 | -7.2 | 2.04 | 5.18 | -3.36 | -- | -1.35 | 17 | 21.28 | 1296 | 15.4 | -- |
| 1142.37 | 1.57 | 7.8 | -9.13 | 2.19 | 5.5 | -- | -7.01 | -1.86 | 17.3 | 22.73 | 1299 | 14 | -- |
| 1171.87 | 1.59 | 7.57 | -7.23 | 2.33 | 5.29 | -- | -- | -1.42 | 17.2 | 21.21 | 1282 | 13.7 | -- |
| 1201.96 | 1.61 | 7.78 | -9.23 | -- | 6.39 | -- | -7.49 | -2 | -- | 22.01 | 1840 | 13.7 | -- |
| 1979.07 | 2.09 | 7.36 | -5.53 | 1.7 | -- | -2.71 | -- | -0.475 | 18.3 | -- | -- | -- | -- |
| 1993.89 | 2.09 | 7.37 | -5.51 | 1.7 | -- | -- | -- | -0.487 | 18.8 | -- | -- | -- | -- |
| 1237.96 | 1.64 | 7.55 | -7.32 | -- | 5.98 | -- | -- | -1.51 | -- | 20.81 | 1819 | 13.5 | -- |
| 2395.01 | 2.28 | 7.3 | -- | 2.27 | 3.36 | -- | -- | -0.218 | 17.4 | 23.77 | 1194 | 10.9 | -- |
| 2145.12 | 2.16 | 7.33 | -5.54 | -- | -- | -- | -- | -0.52 | -- | -- | -- | -- | -- |
| 2793.31 | 2.47 | 7.23 | -- | 1.77 | -- | -- | -- | 0.126 | 18.7 | -- | -- | -- | -- |
| 2511.34 | 2.33 | 7.24 | -- | -- | 3.62 | -- | -- | -0.079 | -- | 25.3 | 1839 | 9.76 | -- |
| 2955.98 | 2.54 | 7.19 | -- | -- | -- | -- | -- | 0.0952 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 1145.16 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 2 | 1149.19 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 4 | 1151.39 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 9 |
| 22 | 1156.06 | temperature | 25 | 1440 | > th | dose dependent | sin | 19 | NA |
| 41 | 1159.27 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 22 |
| 64 | 1161.17 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 16 |
| 311 | 1168.96 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 333 | 1170.79 | wind | 3 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 395 | 1174.33 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 11 |
| 531 | 1182.83 | wind | 5 | 43200 | > th | dose independent | rect. | 4 | 13 |
| 541 | 1183.91 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 17 |
| 556 | 1184.97 | wind | 5 | 43200 | < th | dose independent | rect. | 3 | 14 |
| 557 | 1185.15 | wind | 5 | 43200 | > th | dose dependent | sin | 1 | NA |
| 567 | 1185.97 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 11 |
| 610 | 1188.92 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 2 |
| 650 | 1191.70 | wind | 5 | 43200 | > th | dose dependent | rect. | 19 | 22 |
| 657 | 1192.04 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 20 |
| 672 | 1192.80 | wind | 5 | 43200 | < th | dose independent | rect. | 19 | 22 |
| 699 | 1193.94 | wind | 5 | 43200 | > th | dose independent | sin | 1 | NA |
| 717 | 1195.01 | wind | 7 | 43200 | < th | dose independent | rect. | 20 | 20 |
| 737 | 1195.80 | wind | 5 | 43200 | > th | dose independent | rect. | 3 | 19 |
| 744 | 1196.01 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 22 |
| 816 | 1198.60 | wind | 5 | 43200 | < th | dose independent | sin | 1 | NA |
| 858 | 1200.50 | wind | 5 | 43200 | > th | dose dependent | no | NA | NA |
| 918 | 1202.46 | wind | 5 | 43200 | < th | dose independent | rect. | 3 | 19 |