BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0135500 Os10g0135500|AK099992
(410 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0135500 Cyclin-like F-box domain containing protein 590 e-169
Os10g0135400 Cyclin-like F-box domain containing protein 302 3e-82
Os10g0135300 Cyclin-like F-box domain containing protein 224 1e-58
Os02g0199600 Cyclin-like F-box domain containing protein 65 6e-11
>Os10g0135500 Cyclin-like F-box domain containing protein
Length = 410
Score = 590 bits (1522), Expect = e-169, Method: Compositional matrix adjust.
Identities = 302/390 (77%), Positives = 302/390 (77%)
Query: 21 QELVVEXXXXXXXXXXXXXXXXXXXXXXXXXTSRAFLRRVXXXXXXXXXXXXXXXXXXSR 80
QELVVE TSRAFLRRV SR
Sbjct: 21 QELVVEILIRLDDLADLARAASACRALRRLITSRAFLRRVHALHPRPLLGLLHLEHHGSR 80
Query: 81 CRFLPAEPPHPXXXXXXXXXXXXXXXXXXXXXXXXLPGRSGDWRLRDVRHGLAVLSTRHA 140
CRFLPAEPPHP LPGRSGDWRLRDVRHGLAVLSTRHA
Sbjct: 81 CRFLPAEPPHPSAATAAAVARAFDSDSDSDSSFSFLPGRSGDWRLRDVRHGLAVLSTRHA 140
Query: 141 VTDDGCFSFPDVVVCNPLRRRYAWIPPISDDLAAPIRSLGVGVEDFDYLVAPAGREGLSF 200
VTDDGCFSFPDVVVCNPLRRRYAWIPPISDDLAAPIRSLGVGVEDFDYLVAPAGREGLSF
Sbjct: 141 VTDDGCFSFPDVVVCNPLRRRYAWIPPISDDLAAPIRSLGVGVEDFDYLVAPAGREGLSF 200
Query: 201 RVICRPQLPMGCDVTVFVFSSSAVIWRXXXXXXXXXXXQLVSPQYAHGYAYWRLIRSAXX 260
RVICRPQLPMGCDVTVFVFSSSAVIWR QLVSPQYAHGYAYWRLIRSA
Sbjct: 201 RVICRPQLPMGCDVTVFVFSSSAVIWRAATLHACAATAQLVSPQYAHGYAYWRLIRSATR 260
Query: 261 XXXXXXXXMDFFFVDFEQRSVPWQAIGEAGEVGRLAMFNIAHANHTVELLSGAIRGSADE 320
MDFFFVDFEQRSVPWQAIGEAGEVGRLAMFNIAHANHTVELLSGAIRGSADE
Sbjct: 261 LLLLDTRDMDFFFVDFEQRSVPWQAIGEAGEVGRLAMFNIAHANHTVELLSGAIRGSADE 320
Query: 321 HWRHDKTIPLLPGYKWRILKLAEGYLLLQGRILGDGTSQFTPGDQLQYFTLDINTFKLER 380
HWRHDKTIPLLPGYKWRILKLAEGYLLLQGRILGDGTSQFTPGDQLQYFTLDINTFKLER
Sbjct: 321 HWRHDKTIPLLPGYKWRILKLAEGYLLLQGRILGDGTSQFTPGDQLQYFTLDINTFKLER 380
Query: 381 LCASTPQGISYHPQFELYRCFPPPLSFSSI 410
LCASTPQGISYHPQFELYRCFPPPLSFSSI
Sbjct: 381 LCASTPQGISYHPQFELYRCFPPPLSFSSI 410
>Os10g0135400 Cyclin-like F-box domain containing protein
Length = 386
Score = 302 bits (773), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 170/302 (56%), Positives = 202/302 (66%), Gaps = 16/302 (5%)
Query: 116 LPGRSGDWRLRDVRHGLAVLSTRHAVT-----DDGCFSFPDVVVCNPLRRRYAWIPPISD 170
LP + WRLRDVRHGLA+LS+ + + D F FPDVVVC+P+RRR+ +PPI D
Sbjct: 94 LPDHAAGWRLRDVRHGLALLSSSSSSSYLSPLGDRGF-FPDVVVCDPMRRRHVRVPPIPD 152
Query: 171 DLAAPIRSLGVGVEDFDYLVAPAGREGLSFRVICRPQLPMGCDVTVFVFSSSAVIWRXXX 230
DL A +R + VE FDYL+APAGR+G SFRV+CRP+LP CDVTVFVFSS A WR
Sbjct: 153 DLTAGVRR--IAVEHFDYLLAPAGRDGSSFRVVCRPKLPKQCDVTVFVFSSGAAFWRAAV 210
Query: 231 XXXXXXXXQLVSPQYAHGYAYWRLIRSAXXXXXXXXXXMDFFFVDFEQRSVPWQAIGEAG 290
+L PQ HGY YWR S+ MDFFFV+ + IGEA
Sbjct: 211 LDACAATEKLFLPQSVHGYVYWR-THSSGTLLMLDTRDMDFFFVNIQTNKC---VIGEAE 266
Query: 291 EVGRLAMFN--IAHANHTVELLSGAIRGSADEHWRHDKTIPLLPGYKWRILKLAEGYLLL 348
EVGRLA+FN + H VE+LS AIRG ADE WRHD+TIPLLPGYKWR ++AEGYLLL
Sbjct: 267 EVGRLAVFNTIVDVGVHKVEILSKAIRGGADEPWRHDRTIPLLPGYKWRAARMAEGYLLL 326
Query: 349 QGRILGDGTSQFTPGDQLQYFTLDINTFKLERLCASTPQGISYHPQFELYRCFPPPLSFS 408
G I+G+ S TPG QLQ+FTLD+ T KLE LC S +G +HPQF+LYR FPPPLS S
Sbjct: 327 HG-IVGN-NSWSTPGIQLQHFTLDLKTLKLESLCDSISRGRHHHPQFDLYRSFPPPLSLS 384
Query: 409 SI 410
SI
Sbjct: 385 SI 386
>Os10g0135300 Cyclin-like F-box domain containing protein
Length = 415
Score = 224 bits (570), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 151/312 (48%), Positives = 174/312 (55%), Gaps = 25/312 (8%)
Query: 116 LPGRSGDWRLRDVRHGLAVLSTRHAVTDDGCFSFPDVVVCNPLRRRYAWIPPISDDLAAP 175
LP G WRLR++R GLA+LSTR GCF FPDVVVC+PL RRYA IP I DDLAAP
Sbjct: 112 LPATPGGWRLRNIRRGLALLSTRDG--GGGCF-FPDVVVCDPLHRRYAQIPQIPDDLAAP 168
Query: 176 IRSLGVGVEDFDYLVAPAGREGL-------SFRVICRPQLPMGCDVTVFVFSSSAVIWRX 228
IR G + FDYL+APA RE SF+V+CRP+L CD+TVFVFSS A IWR
Sbjct: 169 IRRSGSLPKGFDYLLAPARREEEEEEEEDSSFKVVCRPRLTEECDITVFVFSSGAGIWRA 228
Query: 229 XXXXXXXXXXQLVS--PQYAHGYAYWRLIRSAXXXXXXXXXXMDFFFVDFEQRSVPW--- 283
V+ P+ H YW L R M+ D S +
Sbjct: 229 ATLGSSLATAISVTSRPRCVHRCVYW-LTRFLDRLLILDTDEMELSMFDNFPPSTGFVLN 287
Query: 284 ---QAIGEAGEVGRLAMFNIAHANHTVELLSGAIRGSADEHWRHDKTIPLLPGYK-WRIL 339
AI EAGE RL +FN+ H V LLS AIRGSADE WRHDKTIPLLPGY WR +
Sbjct: 288 HTTAAIAEAGE-DRLGVFNL--DVHNVNLLSRAIRGSADEQWRHDKTIPLLPGYSIWRFV 344
Query: 340 KLAEGYLLLQGRILGDGTSQFTP-GDQLQYFTLDINTFKLERLCASTPQGISYHPQFELY 398
A+ + + Q P D LQYF+LD+ TF+LERLC T P ELY
Sbjct: 345 NHADVDGYILLGGVLGSGLQSDPITDGLQYFSLDLKTFRLERLCPMTIYQARNSPT-ELY 403
Query: 399 RCFPPPLSFSSI 410
FPPPLS SSI
Sbjct: 404 TSFPPPLSLSSI 415
>Os02g0199600 Cyclin-like F-box domain containing protein
Length = 434
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 88/330 (26%), Positives = 128/330 (38%), Gaps = 50/330 (15%)
Query: 117 PGRSGDWRLRDVRHGLAVLSTRHAVTDDGCFSFPDVVVCNPLRRRYAWIPPISDDLAAPI 176
P R W +RD R G +L R A DD F P++ VC+PL RRY +PPI +LAA +
Sbjct: 119 PRRGLGWIVRDHRDGRFLLD-RVASLDDNVF--PELAVCDPLSRRYVVLPPIPRELAAAV 175
Query: 177 -RSLGV--GVEDFDYLVAPAGREGL-------SFRVICRPQLPMGCDVTVFVFSSSAVIW 226
R LGV G + +AP + +F VI + P V F F+S W
Sbjct: 176 DRPLGVIGGRRRCEPFLAPCDADADADAESEPAFAVIWTARCPR--KVVAFAFASRDGRW 233
Query: 227 RXXXXXXXXXXXQLVSP------------QYAHGYAYWRLIRSAXXXXXXXXXXMDFFFV 274
R + SP YAHG YW L M+
Sbjct: 234 RALPSPECFVWSRHRSPFGCPVHAVWNRRFYAHGCFYW-LDCLTHRWLVLDTRAMEITVK 292
Query: 275 DFEQRSVPWQ-----AIGEAGEVGRLAMFNIAHANHTVELLSGAIRGSADEHWRHDKTIP 329
+ W+ GE G+VG A + G WR ++T+P
Sbjct: 293 QIPSPACYWEEHVAVVEGEDGKVGVFAHDFYRAGGEACLYYYTIVDGGDGPRWRLERTVP 352
Query: 330 L----LPGYKWRILKLAEGYLLLQGRILGDGTSQFTP---GDQLQYFTLDINTFKLERLC 382
L G + I A G L+L+ + GT F ++ + +D+ +F+LE +C
Sbjct: 353 LPWPAAHGRPYSIRAAANGSLILE---VSHGTPAFMTSYRSRDVELYRIDVKSFELEMIC 409
Query: 383 AS--TPQGISYHPQFELYRCFPPPLSFSSI 410
+ I++ Y FPP LS ++
Sbjct: 410 RARCAAGDIAW-----AYFGFPPLLSLPTV 434
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.326 0.141 0.460
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,060,316
Number of extensions: 479546
Number of successful extensions: 985
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 977
Number of HSP's successfully gapped: 4
Length of query: 410
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 307
Effective length of database: 11,657,759
Effective search space: 3578932013
Effective search space used: 3578932013
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 157 (65.1 bits)