BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0104900 Os10g0104900|AK112062
(406 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0104900 Similar to DNA (cytosine-5)-methyltransferase ... 835 0.0
Os05g0224800 Similar to Modification methyltransferase, cyt... 295 4e-80
Os03g0798300 Similar to Cytosine-5 DNA methyltransferase ME... 202 5e-52
Os03g0226800 Similar to Chromomethylase CMT3 199 2e-51
Os07g0182900 Similar to Cytosine-5 DNA methyltransferase ME... 198 7e-51
>Os10g0104900 Similar to DNA (cytosine-5)-methyltransferase 1 (EC 2.1.1.37)
(Dnmt1) (DNA methyltransferase I) (DNA MTase RnoIP)
(MCMT) (M.RnoIP). Splice isoform 3
Length = 406
Score = 835 bits (2158), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/406 (100%), Positives = 406/406 (100%)
Query: 1 GDVDVICGGPPCQGISGFNRFRNRKEPLKDEKNKQMVTFMDIVAYLKPKYVLMENVVDIL 60
GDVDVICGGPPCQGISGFNRFRNRKEPLKDEKNKQMVTFMDIVAYLKPKYVLMENVVDIL
Sbjct: 1 GDVDVICGGPPCQGISGFNRFRNRKEPLKDEKNKQMVTFMDIVAYLKPKYVLMENVVDIL 60
Query: 61 KFADGYLGRYALSRLVAMKYQARLGMMVAGCYGLPQFRMRVFLWGALPTMVLPKYPLPTH 120
KFADGYLGRYALSRLVAMKYQARLGMMVAGCYGLPQFRMRVFLWGALPTMVLPKYPLPTH
Sbjct: 61 KFADGYLGRYALSRLVAMKYQARLGMMVAGCYGLPQFRMRVFLWGALPTMVLPKYPLPTH 120
Query: 121 NVVVRGGAPNAFSQSIVAYDETQKPTLKNALLLGDAISDLPEVNNHQPNEVMEYGSSPKT 180
NVVVRGGAPNAFSQSIVAYDETQKPTLKNALLLGDAISDLPEVNNHQPNEVMEYGSSPKT
Sbjct: 121 NVVVRGGAPNAFSQSIVAYDETQKPTLKNALLLGDAISDLPEVNNHQPNEVMEYGSSPKT 180
Query: 181 EFQRYIRLSRKEMLDSSFEGKDGPDLGKLLDHQPLKLNKDDHERVQQIPVKKGANFRDLK 240
EFQRYIRLSRKEMLDSSFEGKDGPDLGKLLDHQPLKLNKDDHERVQQIPVKKGANFRDLK
Sbjct: 181 EFQRYIRLSRKEMLDSSFEGKDGPDLGKLLDHQPLKLNKDDHERVQQIPVKKGANFRDLK 240
Query: 241 GVRVGANNIVEWDPDVPRVYLSSGKPLVPDYAMSFIKGRSLKPFGRLWWDETVPTVVTRA 300
GVRVGANNIVEWDPDVPRVYLSSGKPLVPDYAMSFIKGRSLKPFGRLWWDETVPTVVTRA
Sbjct: 241 GVRVGANNIVEWDPDVPRVYLSSGKPLVPDYAMSFIKGRSLKPFGRLWWDETVPTVVTRA 300
Query: 301 EPHNQIILHPNQARVLTVRENARLQGFPDYYKMFGPIKEKYIQVGNAVAVPVARALGYSL 360
EPHNQIILHPNQARVLTVRENARLQGFPDYYKMFGPIKEKYIQVGNAVAVPVARALGYSL
Sbjct: 301 EPHNQIILHPNQARVLTVRENARLQGFPDYYKMFGPIKEKYIQVGNAVAVPVARALGYSL 360
Query: 361 GLAYQRESEGSSPLFVLPDSFTEVGRQAAPARASSVGIPVGEVVEQ 406
GLAYQRESEGSSPLFVLPDSFTEVGRQAAPARASSVGIPVGEVVEQ
Sbjct: 361 GLAYQRESEGSSPLFVLPDSFTEVGRQAAPARASSVGIPVGEVVEQ 406
>Os05g0224800 Similar to Modification methyltransferase, cytosine-specific
Length = 304
Score = 295 bits (755), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 148/296 (50%), Positives = 195/296 (65%), Gaps = 1/296 (0%)
Query: 87 MVAGCYGLPQFRMRVFLWGALPTMVLPKYPLPTHNVVVRGGAPNAFSQSIVAYDETQKPT 146
M AGCYGLPQFRMRVFL G LP +PLPTH +V+ G P AF +++V +
Sbjct: 1 MAAGCYGLPQFRMRVFLLGCHSKEKLPPFPLPTHEAIVKNGCPLAFERNLVGWPNDTPMQ 60
Query: 147 LKNALLLGDAISDLPEVNNHQPNEVMEYGSSPKTEFQRYIRLSRKEMLDSSFEGKDGPDL 206
L ++L D +SDLPEV N + + M Y P+TEFQRYIR E+
Sbjct: 61 LARPIVLEDILSDLPEVANGESRDEMLYVKGPQTEFQRYIRSFNVEVHGPRAHVTKDSKS 120
Query: 207 GKLLDHQPLKLNKDDHERVQQIPVKKGANFRDLKGVRVGANNIVEWDPDVPRVYLSSGKP 266
KL DH+PL L+ D+++R+ QIP +KGANFRDL GV VG +N+ DP RV L SG+P
Sbjct: 121 SKLYDHRPLVLDNDNYQRILQIPKRKGANFRDLSGVIVGPDNVARLDPTKERVLLPSGRP 180
Query: 267 LVPDYAMSFIKGRSLKPFGRLWWDETVPTVVTRAEPHNQIILHPNQARVLTVRENARLQG 326
LV D +++ G+SL+PFGR+WWDE V TV+T Q ++HP Q R+LT+RE+ARLQG
Sbjct: 181 LVLDCILAYENGKSLRPFGRVWWDEVVGTVLTVPNARMQALIHPAQDRLLTIRESARLQG 240
Query: 327 FPDYYKMFGPIKEKYIQVGNAVAVPVARALGYSLGLAYQRESEGSSPLFVLPDSFT 382
FPD Y+ G +K++Y Q+GNAVAVPV RALGY+L +AY ++S G PL +LP +F
Sbjct: 241 FPDNYRFRGTVKDRYRQIGNAVAVPVGRALGYALAMAYLKKS-GDDPLMLLPPNFA 295
>Os03g0798300 Similar to Cytosine-5 DNA methyltransferase MET1 (Fragment)
Length = 413
Score = 202 bits (513), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 129/378 (34%), Positives = 190/378 (50%), Gaps = 56/378 (14%)
Query: 1 GDVDVICGGPPCQGISGFNRFRNRKEPLKDEKNKQMVTFMDIVAYLKPKYVLMENVVDIL 60
G+V+ I GGPPCQG SG NRF + P + + ++ F+ Y +P++ L+ENV + +
Sbjct: 72 GEVEFINGGPPCQGFSGMNRFN--QSPWSKVQCEMILAFLSFAEYFRPRFFLLENVRNFV 129
Query: 61 KFADGYLGRYALSRLVAMKYQARLGMMVAGCYGLPQFRMRVFLWGALPTMVLPKYPLPTH 120
F G R L+ L+ M YQ R G++ AG YG+ Q R R F+W A P LP++P P H
Sbjct: 130 SFNKGQTFRLTLASLLEMGYQVRFGILEAGAYGVAQSRKRAFIWAAAPGETLPEWPEPMH 189
Query: 121 -------NVVVRGGAPNAFSQSIVAYDETQKPTLKNALLLGDAISDLPEVNNHQPNEVME 173
+ + G A +S A + T++ D I DLP V N ++
Sbjct: 190 VFASPELKITLPDGKFYAAVKSTAAGAPFRSITVR------DTIGDLPAVENGAGKPTIQ 243
Query: 174 YGSSPKTEFQRYIRLSRKEMLDSSFEGKDGPDLGKLLDHQPLKLNKDDHERVQQIPVKKG 233
YGS P + FQ+ IR D+ L DH ++N+ + R + IP + G
Sbjct: 244 YGSGPVSWFQKKIR----------------SDMASLNDHISKEMNELNLIRCKHIPKRPG 287
Query: 234 ANFRDLKGVRVGANNIVEWDPDVPRVYLSSGKPL------VPDYAMSFIKGRSLKPFGRL 287
++ DL PD +V LS+G+ + +P+ A + + L +GRL
Sbjct: 288 CDWHDL--------------PD-EKVKLSTGQMVDLIPWCLPNTAKRHNQWKGL--YGRL 330
Query: 288 WWDETVPTVVTRAEPHNQI--ILHPNQARVLTVRENARLQGFPDYYKMFGPIKEKYIQVG 345
W+ PT VT +P ++ HP Q R++TVRE AR QGFPD Y+ G I+ K+ Q+G
Sbjct: 331 DWEGNFPTSVTDPQPMGKVGMCFHPEQDRIITVRECARSQGFPDSYRFAGNIQNKHRQIG 390
Query: 346 NAVAVPVARALGYSLGLA 363
NAV P+A ALG L A
Sbjct: 391 NAVPPPLAYALGRKLKQA 408
>Os03g0226800 Similar to Chromomethylase CMT3
Length = 130
Score = 199 bits (507), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 93/111 (83%), Positives = 100/111 (90%)
Query: 1 GDVDVICGGPPCQGISGFNRFRNRKEPLKDEKNKQMVTFMDIVAYLKPKYVLMENVVDIL 60
G VDVICGGPPCQGISGFNRFR +PL+DEKNKQ+V FMDIV YL+PKYVLMENVVDIL
Sbjct: 4 GAVDVICGGPPCQGISGFNRFRKHNDPLEDEKNKQLVVFMDIVKYLRPKYVLMENVVDIL 63
Query: 61 KFADGYLGRYALSRLVAMKYQARLGMMVAGCYGLPQFRMRVFLWGALPTMV 111
KFADG+LGRYA+S LVAM YQARLGMM AG YGLPQFRMR FLWGALP+MV
Sbjct: 64 KFADGFLGRYAMSCLVAMNYQARLGMMAAGYYGLPQFRMRAFLWGALPSMV 114
>Os07g0182900 Similar to Cytosine-5 DNA methyltransferase MET1 (Fragment)
Length = 445
Score = 198 bits (503), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 127/371 (34%), Positives = 190/371 (51%), Gaps = 48/371 (12%)
Query: 1 GDVDVICGGPPCQGISGFNRFRNRKEPLKDEKNKQMVTFMDIVAYLKPKYVLMENVVDIL 60
G+V+ I GGPPCQG SG NRF + P + + ++ F+ Y +P++ L+ENV + +
Sbjct: 103 GEVEFINGGPPCQGFSGMNRFN--QSPWSKVQCEMILAFLSFAEYFRPRFFLLENVRNFV 160
Query: 61 KFADGYLGRYALSRLVAMKYQARLGMMVAGCYGLPQFRMRVFLWGALPTMVLPKYPLPTH 120
F G R ++ L+ M YQ R G++ AG +G+ Q R R F+W A P LP +P P H
Sbjct: 161 SFNKGQTFRLTVASLLEMGYQVRFGILEAGTFGVAQSRKRAFIWAAAPGETLPDWPEPMH 220
Query: 121 NVV---VRGGAPNAFSQSIVAYDETQKPTLKNALLLGDAISDLPEVNNHQPNEVMEYGSS 177
++ P+ + A T A+ + D I DLP+V N ++EYG
Sbjct: 221 VFASPELKINLPDG--KYYAAAKSTAGGAPFRAITVRDTIGDLPKVENGASKLLLEYGGE 278
Query: 178 PKTEFQRYIRLSRKEMLDSSFEGKDGPDLGKLLDHQPLKLNKDDHERVQQIPVKKGANFR 237
P + FQ+ IR G + L DH ++N+ + R Q+IP + G ++
Sbjct: 279 PISWFQKKIR---------------GNTIA-LNDHISKEMNELNLIRCQRIPKRPGCDWH 322
Query: 238 DLKGVRVGANNIVEWDPDVPRVYLSSGKPL------VPDYAMSFIKGRSLKPFGRLWWDE 291
DL PD +V LSSG+ + +P+ A + + L +GRL W+
Sbjct: 323 DL--------------PD-EKVKLSSGQLVDLIPWCLPNTAKRHNQWKGL--YGRLDWEG 365
Query: 292 TVPTVVTRAEPHNQI--ILHPNQARVLTVRENARLQGFPDYYKMFGPIKEKYIQVGNAVA 349
PT VT +P ++ HP+Q R++TVRE AR QGFPD Y+ G I+ K+ Q+GNAV
Sbjct: 366 NFPTSVTDPQPMGKVGMCFHPDQDRIITVRECARSQGFPDNYQFAGNIQSKHRQIGNAVP 425
Query: 350 VPVARALGYSL 360
P+A ALG L
Sbjct: 426 PPLAFALGRKL 436
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.138 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,479,280
Number of extensions: 630906
Number of successful extensions: 1178
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1167
Number of HSP's successfully gapped: 5
Length of query: 406
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 303
Effective length of database: 11,657,759
Effective search space: 3532300977
Effective search space used: 3532300977
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)