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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0798300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Cytosine-5 DNA methyltransferase MET1 (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.09 (0.0129) R2 : 0.000912
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0175 (0.0271) R2dN8 : 0.00118 R2N8 : 0.000912
σ : 0.242
deviance : 26.92
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
25.04 0.235 3.14 -0.273 0.09 2.03 -0.0162 -9.84 0.0362 9.83 1000 15 -- --
25.25 0.236 3.08 0.046 0.0869 0.346 -0.0294 -- 0.037 9.7 1000 15 -- --
25.04 0.233 3.14 -0.274 0.0903 2.03 -- -9.85 0.0364 9.88 1000 14 -- --
25.24 0.234 3.08 0.0543 0.0997 0.541 -- -- 0.043 9.2 997.1 97 -- --
25.53 0.235 3.14 -0.264 -- 1.97 -- -9.48 0.0359 -- 1000 13 -- --
26.32 0.241 3.09 0.0756 0.0874 -- -0.0235 -- 0.0257 9.84 -- -- -- --
26.32 0.24 3.09 0.0748 0.0874 -- -- -- 0.0257 9.93 -- -- -- --
25.65 0.236 3.09 0.0571 -- 0.581 -- -- 0.0326 -- 996.8 230 -- --
25.19 0.234 3.09 -- 0.0948 0.615 -- -- 0.026 9.72 996.8 237 -- --
26.78 0.242 3.09 0.0738 -- -- -- -- 0.0257 -- -- -- -- --
26.47 0.241 3.09 -- 0.0871 -- -- -- 0.0173 9.87 -- -- -- --
25.7 0.236 3.09 -- -- 0.755 -- -- 0.023 -- 995 312 -- --
26.92 0.242 3.09 -- -- -- -- -- 0.0175 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 23.93 wind 1.0 30 < th dose independent rect. 10 1
2 23.93 temperature 10.0 1440 > th dose independent rect. 11 1
6 23.93 atmosphere 995.0 1440 > th dose independent rect. 11 1
9 23.93 precipitation 0.1 1440 < th dose independent rect. 11 1
10 23.93 temperature 10.0 1440 > th dose independent rect. 12 23
13 23.93 wind 1.0 30 < th dose dependent rect. 10 1
14 23.93 precipitation 0.1 1440 < th dose dependent rect. 11 1
15 24.06 radiation 40.0 30 < th dose independent rect. 10 1
17 24.12 humidity 70.0 30 < th dose independent rect. 10 1
18 24.13 atmosphere 1010.0 30 < th dose independent rect. 10 1
19 24.14 temperature 25.0 30 > th dose dependent rect. 10 1
20 24.15 atmosphere 1005.0 30 > th dose independent rect. 10 1
21 24.16 radiation 40.0 30 < th dose dependent rect. 10 1
22 24.18 atmosphere 1000.0 30 > th dose dependent rect. 10 1
28 24.25 temperature 30.0 30 < th dose independent rect. 10 1
30 24.26 humidity 70.0 30 < th dose dependent rect. 10 1
31 24.27 radiation 20.0 30 > th dose independent rect. 10 1
32 24.27 wind 5.0 30 < th dose dependent rect. 10 1
34 24.28 temperature 25.0 30 > th dose independent rect. 10 1
41 24.29 humidity 60.0 30 > th dose independent rect. 10 1
43 24.31 temperature 10.0 30 > th dose independent rect. 10 1
47 24.31 humidity 90.0 30 < th dose independent rect. 10 1
50 24.31 radiation 1.0 30 > th dose independent rect. 10 1
51 24.31 precipitation 0.1 30 < th dose independent rect. 10 1
52 24.31 temperature 10.0 30 > th dose independent rect. 11 23
53 24.31 precipitation 0.1 30 < th dose dependent rect. 10 1
54 24.32 wind 1.0 30 > th dose independent rect. 10 1
58 24.43 humidity 50.0 30 > th dose dependent rect. 10 1
59 24.50 radiation 1.0 30 > th dose dependent rect. 10 1
64 24.62 wind 1.0 30 > th dose dependent rect. 10 1
66 24.64 atmosphere 1015.0 30 < th dose dependent rect. 10 1
68 24.72 atmosphere 1000.0 90 < th dose dependent rect. 6 20
69 24.72 atmosphere 1000.0 10 < th dose dependent rect. 7 20
91 24.85 atmosphere 1000.0 90 < th dose independent rect. 6 20
92 24.85 atmosphere 1000.0 270 < th dose dependent rect. 5 15
95 24.86 atmosphere 995.0 270 > th dose independent rect. 20 23
110 24.88 atmosphere 995.0 270 > th dose independent rect. 8 23
129 24.92 atmosphere 1000.0 10 > th dose independent rect. 21 23
134 24.92 atmosphere 1000.0 10 < th dose dependent rect. 14 21
150 24.94 atmosphere 1000.0 90 < th dose dependent rect. 15 11
152 24.94 atmosphere 1000.0 10 < th dose dependent rect. 14 13
185 24.97 wind 9.0 30 < th dose independent rect. 11 23
194 24.97 atmosphere 1000.0 10 < th dose dependent rect. 24 22
196 24.98 atmosphere 995.0 270 > th dose independent sin 13 NA
198 24.98 atmosphere 1000.0 10 < th dose dependent sin 16 NA
209 24.98 atmosphere 1000.0 10 < th dose dependent rect. 1 20
213 24.98 atmosphere 1000.0 90 < th dose dependent rect. 24 21
222 24.99 humidity 80.0 14400 < th dose dependent rect. 23 10
239 24.99 atmosphere 1000.0 270 < th dose dependent rect. 22 22
305 25.02 atmosphere 1000.0 90 < th dose independent rect. 17 3
332 25.03 atmosphere 1000.0 30 > th dose independent rect. 23 21
334 25.03 atmosphere 1000.0 30 > th dose independent rect. 23 23
337 25.03 atmosphere 1000.0 90 < th dose dependent rect. 17 4
343 25.03 temperature 30.0 270 > th dose dependent rect. 15 19
355 25.04 atmosphere 1000.0 270 < th dose dependent sin 20 NA
381 25.05 atmosphere 1000.0 1440 > th dose independent rect. 22 1
384 25.05 atmosphere 995.0 720 > th dose independent rect. 23 16
401 25.06 atmosphere 1000.0 1440 < th dose independent rect. 21 3
404 25.06 atmosphere 1000.0 10 < th dose dependent no NA NA
406 25.06 atmosphere 1000.0 270 < th dose dependent rect. 15 4
425 25.06 atmosphere 1000.0 10 < th dose dependent rect. 9 23
428 25.06 atmosphere 1000.0 10 < th dose dependent rect. 17 23
430 25.07 atmosphere 1000.0 1440 > th dose independent rect. 1 1
431 25.07 atmosphere 1000.0 1440 < th dose independent rect. 22 1
436 25.07 atmosphere 1000.0 1440 > th dose independent rect. 22 4
464 25.07 atmosphere 1000.0 10 < th dose dependent rect. 19 23
479 25.08 temperature 30.0 270 > th dose dependent rect. 15 3
510 25.09 atmosphere 1000.0 720 < th dose dependent rect. 8 1
563 25.10 temperature 30.0 1440 > th dose dependent rect. 15 1
587 25.11 atmosphere 995.0 270 > th dose independent sin 8 NA
590 25.11 temperature 30.0 1440 > th dose independent rect. 15 20
592 25.11 temperature 30.0 270 > th dose dependent sin 11 NA
616 25.12 atmosphere 1000.0 720 < th dose independent rect. 8 1
650 25.13 atmosphere 1000.0 10 < th dose independent rect. 17 4
663 25.13 atmosphere 1000.0 720 < th dose dependent sin 2 NA
686 25.14 atmosphere 995.0 1440 > th dose independent rect. 12 8
691 25.14 atmosphere 1000.0 720 < th dose dependent rect. 7 6
693 25.14 atmosphere 1000.0 720 < th dose dependent rect. 6 9
716 25.15 atmosphere 1000.0 1440 < th dose independent rect. 1 1
722 25.15 temperature 30.0 1440 < th dose independent rect. 15 20
733 25.15 atmosphere 1000.0 10 < th dose dependent rect. 16 5
767 25.16 atmosphere 1000.0 1440 > th dose independent rect. 21 11
768 25.16 atmosphere 1000.0 1440 < th dose independent rect. 21 11
776 25.16 atmosphere 1000.0 90 < th dose independent rect. 23 22
781 25.16 radiation 10.0 270 > th dose dependent rect. 17 1
818 25.17 humidity 80.0 90 < th dose independent rect. 2 1
819 25.17 atmosphere 995.0 1440 > th dose independent rect. 15 1
820 25.17 atmosphere 1000.0 270 < th dose independent rect. 17 1
827 25.17 atmosphere 1000.0 720 < th dose independent rect. 7 6
836 25.17 humidity 80.0 90 < th dose dependent rect. 2 1
837 25.17 atmosphere 1000.0 270 < th dose dependent rect. 17 1
841 25.17 atmosphere 1000.0 10 < th dose dependent rect. 18 2
864 25.18 humidity 90.0 10 < th dose independent rect. 3 1
866 25.18 atmosphere 1000.0 1440 > th dose independent rect. 7 1
872 25.18 temperature 30.0 4320 < th dose independent rect. 3 7
879 25.18 temperature 30.0 4320 < th dose independent rect. 21 13
884 25.18 atmosphere 995.0 1440 > th dose independent rect. 12 15
888 25.18 wind 9.0 14400 > th dose dependent rect. 13 1
889 25.18 humidity 90.0 10 < th dose dependent rect. 3 1
891 25.18 atmosphere 1000.0 1440 < th dose dependent rect. 6 1
895 25.18 temperature 30.0 4320 > th dose dependent rect. 9 7
896 25.18 atmosphere 1000.0 10 < th dose dependent rect. 14 7
912 25.18 atmosphere 1000.0 720 < th dose dependent rect. 1 15
950 25.19 atmosphere 995.0 1440 > th dose independent rect. 15 12
954 25.19 atmosphere 995.0 1440 > th dose independent rect. 5 15
958 25.19 atmosphere 1000.0 30 < th dose independent rect. 1 20
966 25.19 atmosphere 1000.0 90 < th dose independent rect. 13 22
967 25.19 atmosphere 1000.0 10 < th dose independent rect. 22 23
976 25.19 temperature 30.0 4320 > th dose dependent rect. 11 5