Os05g0224800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Modification methyltransferase, cytosine-specific.
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Os05g0224800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Modification methyltransferase, cytosine-specific.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.43 | 0.207 | 10.6 | -0.142 | 0.354 | 1.25 | 1.3 | 1.92 | 0.353 | 18.6 | 1.606 | 706 | -- | -- |
| 20.75 | 0.212 | 10.6 | -0.109 | 0.341 | 1.25 | -0.124 | -- | 0.371 | 18.3 | 1.62 | 705 | -- | -- |
| 20.39 | 0.21 | 10.6 | -0.11 | 0.354 | 1.25 | -- | 0.572 | 0.358 | 18.1 | 1.621 | 695 | -- | -- |
| 20.78 | 0.212 | 10.6 | -0.103 | 0.345 | 1.25 | -- | -- | 0.374 | 18.4 | 1.62 | 705 | -- | -- |
| 21.17 | 0.214 | 10.6 | -0.159 | -- | 0.838 | -- | 0.559 | 0.318 | -- | 1.62 | 673 | -- | -- |
| 23.89 | 0.229 | 10.6 | -0.171 | 0.667 | -- | 0.478 | -- | 0.317 | 5.11 | -- | -- | -- | -- |
| 24.44 | 0.232 | 10.6 | -0.171 | 0.671 | -- | -- | -- | 0.315 | 5.22 | -- | -- | -- | -- |
| 21.55 | 0.216 | 10.6 | -0.143 | -- | 0.844 | -- | -- | 0.359 | -- | 1.81 | 689 | -- | -- |
| 21.07 | 0.214 | 10.6 | -- | 0.35 | 1.26 | -- | -- | 0.382 | 18.4 | 1.621 | 705 | -- | -- |
| 48 | 0.324 | 10.6 | -0.147 | -- | -- | -- | -- | 0.332 | -- | -- | -- | -- | -- |
| 25.21 | 0.235 | 10.6 | -- | 0.668 | -- | -- | -- | 0.334 | 5.23 | -- | -- | -- | -- |
| 21.88 | 0.218 | 10.6 | -- | -- | 0.859 | -- | -- | 0.375 | -- | 1.81 | 678 | -- | -- |
| 48.57 | 0.325 | 10.6 | -- | -- | -- | -- | -- | 0.348 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.18 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 10 | 21 |
| 2 | 19.20 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 15 | 18 |
| 3 | 19.24 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 13 | 22 |
| 4 | 19.25 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 13 | 20 |
| 6 | 19.26 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 15 | 20 |
| 10 | 19.31 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 13 | 17 |
| 45 | 19.45 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 48 | 19.47 | radiation | 1.0 | 720 | < th | dose independent | rect. | 20 | 23 |
| 52 | 19.48 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 59 | 19.51 | humidity | 70.0 | 90 | > th | dose dependent | no | NA | NA |
| 81 | 19.56 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 96 | 19.59 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 107 | 19.61 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 20 | 22 |
| 128 | 19.65 | radiation | 1.0 | 720 | < th | dose independent | rect. | 6 | 16 |
| 133 | 19.66 | humidity | 70.0 | 270 | > th | dose independent | rect. | 13 | 17 |
| 139 | 19.67 | radiation | 1.0 | 720 | > th | dose independent | sin | 0 | NA |
| 177 | 19.73 | radiation | 1.0 | 720 | < th | dose independent | rect. | 13 | 19 |
| 187 | 19.74 | radiation | 1.0 | 720 | < th | dose independent | sin | 23 | NA |
| 200 | 19.75 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 213 | 19.76 | humidity | 70.0 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 214 | 19.77 | radiation | 1.0 | 720 | < th | dose independent | no | NA | NA |
| 244 | 19.80 | radiation | 1.0 | 720 | > th | dose independent | rect. | 7 | 10 |
| 249 | 19.81 | radiation | 1.0 | 720 | > th | dose independent | no | NA | NA |
| 250 | 19.81 | radiation | 1.0 | 720 | > th | dose independent | rect. | 5 | 14 |
| 279 | 19.81 | radiation | 1.0 | 720 | < th | dose independent | rect. | 3 | 20 |
| 335 | 19.83 | humidity | 70.0 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 339 | 19.84 | radiation | 1.0 | 720 | < th | dose independent | rect. | 1 | 22 |
| 371 | 19.88 | radiation | 1.0 | 720 | < th | dose dependent | sin | 23 | NA |
| 384 | 19.90 | radiation | 1.0 | 720 | > th | dose independent | rect. | 13 | 22 |
| 391 | 19.91 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 392 | 19.91 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 393 | 19.91 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 13 | 1 |
| 414 | 19.93 | radiation | 1.0 | 270 | > th | dose independent | rect. | 16 | 23 |
| 435 | 19.95 | radiation | 1.0 | 720 | < th | dose independent | rect. | 6 | 23 |
| 438 | 19.95 | humidity | 80.0 | 90 | > th | dose dependent | rect. | 4 | 19 |
| 456 | 19.97 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 11 | 3 |
| 463 | 19.98 | humidity | 90.0 | 90 | > th | dose independent | rect. | 5 | 18 |
| 464 | 19.98 | radiation | 1.0 | 720 | > th | dose independent | rect. | 15 | 20 |
| 489 | 20.00 | radiation | 1.0 | 720 | > th | dose independent | rect. | 8 | 23 |
| 503 | 20.01 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 5 | 17 |
| 510 | 20.02 | radiation | 1.0 | 720 | > th | dose independent | rect. | 16 | 18 |
| 530 | 20.04 | humidity | 80.0 | 720 | < th | dose independent | rect. | 8 | 10 |
| 547 | 20.05 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 13 | 19 |
| 581 | 20.08 | radiation | 1.0 | 720 | < th | dose dependent | no | NA | NA |
| 610 | 20.10 | humidity | 80.0 | 30 | < th | dose independent | rect. | 1 | 20 |
| 630 | 20.12 | humidity | 90.0 | 10 | > th | dose dependent | sin | 21 | NA |
| 655 | 20.14 | radiation | 1.0 | 720 | > th | dose independent | sin | 13 | NA |
| 657 | 20.14 | humidity | 80.0 | 30 | < th | dose independent | rect. | 19 | 23 |
| 683 | 20.15 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 685 | 20.16 | humidity | 90.0 | 90 | > th | dose independent | sin | 22 | NA |
| 702 | 20.17 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 2 | 19 |
| 720 | 20.18 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 3 | 20 |
| 776 | 20.23 | humidity | 90.0 | 90 | > th | dose independent | rect. | 4 | 23 |
| 777 | 20.23 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 14 | 9 |
| 827 | 20.25 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 1 | 22 |
| 867 | 20.28 | humidity | 90.0 | 90 | < th | dose independent | rect. | 7 | 21 |
| 870 | 20.28 | humidity | 90.0 | 90 | > th | dose independent | rect. | 23 | 23 |
| 904 | 20.29 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 936 | 20.31 | humidity | 90.0 | 90 | < th | dose independent | sin | 23 | NA |
| 968 | 20.32 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 9 | 12 |
| 979 | 20.33 | radiation | 1.0 | 720 | < th | dose independent | rect. | 3 | 15 |
| 992 | 20.34 | humidity | 80.0 | 720 | < th | dose independent | rect. | 3 | 15 |