FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0226800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Chromomethylase CMT3.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.22 (0.0513) R2 : 0.323
β1 : 0.931 (0.187) R2dD : 0.0392 R2D : 0.0168
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.26 (0.197) R2dE : 0.245 R2E : 0.0512
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -9.32 (0.833) R2dD*E : 0.224 R2D*E : 0.0546
γ1 : -0.0756 (0.112) R2dN8 : 0.00096 R2N8 : 0.0013
σ : 0.936
deviance : 403.59
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 6.6
memory length : 4321
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 18
open length of G : 3.13

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
390.89 0.929 3.22 0.899 0.409 -2.23 1.01 -9.18 -0.071 14.8 6.7 4322 18 3.02
442.02 0.979 3.21 0.872 0.291 -1.87 0.93 -- -0.0716 14.8 8.797 4319 18.1 2.97
393.42 0.924 3.22 0.955 0.413 -2.29 -- -9.22 -0.0669 14.1 6.676 4322 18 3.12
435.33 0.972 3.21 0.663 0.33 -2.05 -- -- -0.113 13.4 8.8 4319 18.2 2.99
403.59 0.936 3.22 0.931 -- -2.26 -- -9.32 -0.0756 -- 6.6 4321 18 3.13
561.75 1.11 3.18 0.654 0.461 -- 0.846 -- -0.223 14.1 -- -- -- --
564.25 1.11 3.17 0.678 0.461 -- -- -- -0.219 13.6 -- -- -- --
440.46 0.977 3.21 0.43 -- -2.48 -- -- -0.115 -- 8.8 4319 18.2 2.98
433.84 0.97 3.21 -- 0.383 -2.47 -- -- -0.12 13.2 8.789 4319 18.3 2.86
577.25 1.12 3.18 0.66 -- -- -- -- -0.229 -- -- -- -- --
576.38 1.12 3.19 -- 0.449 -- -- -- -0.295 13.5 -- -- -- --
443.17 0.98 3.21 -- -- -2.5 -- -- -0.134 -- 8.7 4319 18.3 2.86
588.74 1.13 3.19 -- -- -- -- -- -0.302 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 401.03 wind 7 4320 < th dose independent rect. 18 3
4 403.64 wind 5 4320 > th dose dependent rect. 18 4
7 404.91 wind 5 4320 > th dose independent rect. 21 1
8 405.31 wind 5 4320 > th dose dependent rect. 20 3
9 405.40 wind 7 4320 > th dose independent rect. 18 3
64 411.02 wind 9 4320 > th dose independent rect. 20 1
118 415.38 humidity 80 1440 < th dose independent rect. 22 1
138 418.69 humidity 90 1440 < th dose dependent rect. 3 1
150 422.48 atmosphere 995 14400 < th dose independent rect. 18 1
153 422.48 atmosphere 995 14400 < th dose dependent rect. 18 1
157 422.70 wind 7 4320 > th dose independent rect. 8 1
178 423.62 wind 7 4320 < th dose independent rect. 8 1
180 424.05 atmosphere 995 14400 > th dose independent rect. 16 3
181 424.15 humidity 90 1440 < th dose dependent rect. 24 7
196 425.07 humidity 80 1440 > th dose independent rect. 22 1
208 425.94 humidity 90 1440 < th dose dependent rect. 2 5
209 426.02 atmosphere 995 14400 > th dose independent rect. 13 6
241 426.22 atmosphere 995 14400 > th dose independent rect. 8 11
245 426.26 atmosphere 995 14400 > th dose independent rect. 10 9
284 427.26 temperature 20 720 < th dose independent rect. 18 1
385 428.90 humidity 90 1440 < th dose dependent rect. 24 4
397 429.47 atmosphere 995 14400 > th dose independent sin 1 NA
423 429.78 atmosphere 1000 4320 < th dose dependent rect. 12 1
454 429.98 atmosphere 995 14400 < th dose independent sin 1 NA
477 430.15 atmosphere 995 14400 > th dose independent rect. 18 22
555 430.52 atmosphere 995 14400 < th dose dependent sin 22 NA
714 431.18 atmosphere 995 14400 < th dose independent rect. 18 22
748 431.31 atmosphere 995 14400 > th dose independent rect. 14 23
750 431.33 atmosphere 995 14400 > th dose independent no NA NA
752 431.34 atmosphere 995 14400 > th dose independent rect. 10 23
753 431.34 atmosphere 995 14400 > th dose independent rect. 12 23
882 432.09 atmosphere 995 14400 < th dose independent no NA NA