Os10g0104900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to DNA (cytosine-5)-methyltransferase 1 (EC 2.1.1.37) (Dnmt1) (DNA methyltransferase I) (DNA MTase RnoIP) (MCMT) (M.RnoIP). Splice isoform 3.
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Os10g0104900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to DNA (cytosine-5)-methyltransferase 1 (EC 2.1.1.37) (Dnmt1) (DNA methyltransferase I) (DNA MTase RnoIP) (MCMT) (M.RnoIP). Splice isoform 3.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 221.2 | 0.699 | 3.75 | -1.11 | 0.179 | -0.611 | -0.36 | 2.65 | -0.0419 | 3.33 | 24.9 | 1408 | -- | -- |
| 228.5 | 0.704 | 3.66 | -0.325 | 0.148 | -0.49 | -0.406 | -- | 0.189 | 4.99 | 25.53 | 1081 | -- | -- |
| 221.54 | 0.693 | 3.75 | -1.12 | 0.167 | -0.608 | -- | 2.7 | -0.0468 | 2.8 | 24.9 | 1378 | -- | -- |
| 228.98 | 0.705 | 3.66 | -0.298 | 0.173 | -0.472 | -- | -- | 0.206 | 5.21 | 25.5 | 1002 | -- | -- |
| 222.78 | 0.695 | 3.74 | -1.06 | -- | -0.646 | -- | 2.61 | -0.0453 | -- | 25.05 | 1158 | -- | -- |
| 234.83 | 0.718 | 3.62 | -0.166 | 0.236 | -- | -0.534 | -- | 0.362 | 3.31 | -- | -- | -- | -- |
| 235.7 | 0.719 | 3.62 | -0.156 | 0.233 | -- | -- | -- | 0.366 | 2.87 | -- | -- | -- | -- |
| 230.47 | 0.707 | 3.66 | -0.289 | -- | -0.486 | -- | -- | 0.198 | -- | 25.6 | 1033 | -- | -- |
| 230.99 | 0.708 | 3.64 | -- | 0.198 | -0.416 | -- | -- | 0.251 | 5.61 | 25.5 | 939 | -- | -- |
| 238.83 | 0.722 | 3.62 | -0.146 | -- | -- | -- | -- | 0.372 | -- | -- | -- | -- | -- |
| 236.34 | 0.719 | 3.62 | -- | 0.23 | -- | -- | -- | 0.383 | 2.86 | -- | -- | -- | -- |
| 232.57 | 0.71 | 3.65 | -- | -- | -0.432 | -- | -- | 0.251 | -- | 25.5 | 1027 | -- | -- |
| 239.39 | 0.722 | 3.62 | -- | -- | -- | -- | -- | 0.388 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 204.49 | wind | 7 | 30 | > th | dose dependent | rect. | 7 | 4 |
| 4 | 204.52 | wind | 5 | 10 | > th | dose independent | rect. | 10 | 1 |
| 8 | 204.52 | wind | 5 | 10 | > th | dose dependent | rect. | 10 | 1 |
| 21 | 204.94 | wind | 9 | 30 | > th | dose independent | rect. | 21 | 14 |
| 30 | 205.00 | wind | 9 | 30 | > th | dose dependent | rect. | 21 | 14 |
| 40 | 205.17 | wind | 9 | 30 | > th | dose independent | rect. | 1 | 10 |
| 55 | 205.53 | humidity | 60 | 10 | < th | dose independent | rect. | 10 | 1 |
| 57 | 205.53 | humidity | 60 | 10 | < th | dose dependent | rect. | 10 | 1 |
| 344 | 213.55 | wind | 9 | 10 | > th | dose independent | rect. | 13 | 22 |
| 374 | 216.88 | temperature | 25 | 1440 | < th | dose independent | rect. | 22 | 1 |
| 375 | 217.07 | temperature | 25 | 1440 | > th | dose independent | rect. | 22 | 1 |
| 380 | 217.43 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 17 |
| 384 | 217.81 | temperature | 25 | 1440 | < th | dose independent | sin | 12 | NA |
| 389 | 217.97 | temperature | 25 | 1440 | > th | dose independent | sin | 12 | NA |
| 395 | 218.30 | temperature | 25 | 720 | < th | dose independent | rect. | 16 | 17 |
| 403 | 218.52 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 13 |
| 420 | 218.72 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 13 |
| 422 | 218.73 | temperature | 25 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 439 | 218.83 | temperature | 25 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 449 | 218.89 | temperature | 25 | 1440 | < th | dose independent | rect. | 19 | 14 |
| 453 | 218.94 | temperature | 25 | 1440 | < th | dose independent | rect. | 19 | 8 |
| 478 | 219.09 | temperature | 25 | 1440 | > th | dose independent | rect. | 21 | 3 |
| 490 | 219.16 | temperature | 25 | 1440 | > th | dose independent | rect. | 19 | 8 |
| 501 | 219.22 | temperature | 25 | 1440 | > th | dose independent | rect. | 19 | 14 |
| 610 | 219.73 | temperature | 25 | 4320 | > th | dose dependent | rect. | 17 | 17 |
| 675 | 220.01 | temperature | 25 | 1440 | > th | dose dependent | rect. | 21 | 2 |
| 687 | 220.05 | temperature | 25 | 4320 | > th | dose dependent | sin | 10 | NA |
| 700 | 220.08 | temperature | 25 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 712 | 220.10 | temperature | 25 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 713 | 220.11 | temperature | 25 | 43200 | < th | dose independent | rect. | 21 | 2 |
| 718 | 220.12 | temperature | 25 | 43200 | < th | dose independent | rect. | 18 | 5 |
| 729 | 220.15 | temperature | 25 | 43200 | > th | dose independent | rect. | 18 | 5 |
| 739 | 220.17 | temperature | 25 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 741 | 220.18 | temperature | 25 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 809 | 220.31 | temperature | 25 | 4320 | > th | dose dependent | rect. | 17 | 9 |
| 924 | 220.53 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 16 |