BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0570500 Os09g0570500|AK069259
(451 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0570500 Zinc finger, RING-type domain containing protein 884 0.0
Os02g0823300 Similar to Neuralized protein 366 e-101
Os03g0107500 Conserved hypothetical protein 189 3e-48
Os07g0499800 Zinc finger, RING-type domain containing protein 101 9e-22
>Os09g0570500 Zinc finger, RING-type domain containing protein
Length = 451
Score = 884 bits (2283), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/451 (96%), Positives = 433/451 (96%)
Query: 1 HQRTRLNIGLQQIEGTATVSESGSNTPSIAEGLYEPHSQAESWQDDLEQERRDWEQFSHA 60
HQRTRLNIGLQQIEGTATVSESGSNTPSIAEGLYEPHSQAESWQDDLEQERRDWEQFSHA
Sbjct: 1 HQRTRLNIGLQQIEGTATVSESGSNTPSIAEGLYEPHSQAESWQDDLEQERRDWEQFSHA 60
Query: 61 ITGEESEINWHENTYNGSSHEGTEVEGGQDAHIPESHDELASDNLPPQSHGEQQDNSHLP 120
ITGEESEINWHENTYNGSSHEGTEVEGGQDAHIPESHDELASDNLPPQSHGEQQDNSHLP
Sbjct: 61 ITGEESEINWHENTYNGSSHEGTEVEGGQDAHIPESHDELASDNLPPQSHGEQQDNSHLP 120
Query: 121 EENEELHDSDLQQSRGEWNEGSNPFIPTEVHNEWHSDDHFQGVNEEWHDDDESNDTADNW 180
EENEELHDSDLQQSRGEWNEGSNPFIPTEVHNEWHSDDHFQGVNEEWHDDDESNDTADNW
Sbjct: 121 EENEELHDSDLQQSRGEWNEGSNPFIPTEVHNEWHSDDHFQGVNEEWHDDDESNDTADNW 180
Query: 181 HDDNSDQPIDHDSALIRRANTFVPADDDNVYSTELRELLSRRSVSNLLHSAFRENLDRLI 240
HDDNSDQPIDHDSALIRRANTFVPADDDNVYSTELRELLSRRSVSNLLHSAFRENLDRLI
Sbjct: 181 HDDNSDQPIDHDSALIRRANTFVPADDDNVYSTELRELLSRRSVSNLLHSAFRENLDRLI 240
Query: 241 RSYVERQGRAPLSWDLEGAPPAPDSPEQSQEQHRDEEEQELHDNVXXXXXXXXXXXXXXX 300
RSYVERQGRAPLSWDLEGAPPAPDSPEQSQEQHRDEEEQELHDNV
Sbjct: 241 RSYVERQGRAPLSWDLEGAPPAPDSPEQSQEQHRDEEEQELHDNVVRPPLVIPPPPIPPR 300
Query: 301 XXXWHSELHRNNWIRQNIHRSDIEWEAINDLRADMARLQQGMSHMQRMLEACMDMQLELQ 360
WHSELHRNNWIRQNIHRSDIEWEAINDLRADMARLQQGMSHMQRMLEACMDMQLELQ
Sbjct: 301 QPLWHSELHRNNWIRQNIHRSDIEWEAINDLRADMARLQQGMSHMQRMLEACMDMQLELQ 360
Query: 361 RSVRQEVSAALNRFIGEQGESKETIDDGSKWIHVRKGTCCICCDTPIDSLLYRCGHMCTC 420
RSVRQEVSAALNRFIGEQGESKETIDDGSKWIHVRKGTCCICCDTPIDSLLYRCGHMCTC
Sbjct: 361 RSVRQEVSAALNRFIGEQGESKETIDDGSKWIHVRKGTCCICCDTPIDSLLYRCGHMCTC 420
Query: 421 SKCANELVRSGGKCPLCRAPIIEVIRAYFIM 451
SKCANELVRSGGKCPLCRAPIIEVIRAYFIM
Sbjct: 421 SKCANELVRSGGKCPLCRAPIIEVIRAYFIM 451
>Os02g0823300 Similar to Neuralized protein
Length = 754
Score = 366 bits (940), Expect = e-101, Method: Compositional matrix adjust.
Identities = 188/308 (61%), Positives = 221/308 (71%), Gaps = 13/308 (4%)
Query: 149 EVHNEWHSDD-----HFQGVNEEWHDDDESNDTADNWHDDNSDQPIDHDSALIRRANTFV 203
E+H+E DD H Q ++EWHDD ES+ T +NW DD D P+D + R N F+
Sbjct: 455 ELHSETMEDDAREHDHLQDEHDEWHDD-ESHGT-ENWQDDFQDSPLDM-GPIPRTENRFI 511
Query: 204 PADDDNVYSTELRELLSRRSVSNLLHSAFRENLDRLIRSYVERQGRAPLSWDLEGAPPAP 263
P DDDNVYS ELRELLSRRSVSNLL + F E+L+RLIRSYV+R+GR PL+W+L+ A P+
Sbjct: 512 PPDDDNVYSMELRELLSRRSVSNLLSNGFGESLERLIRSYVQRRGRGPLNWNLDAAIPSV 571
Query: 264 DSPEQSQEQHRDEEEQELHDNVXXXXXXXXXXXXXXXXXXWHSELHRNNWIRQNIHRSDI 323
+SP ++QEQ R+ E ++ V WH EL NNW HR
Sbjct: 572 NSPNENQEQERNAETRQFQAPVNRPALVIPPPPLPPRQPLWHRELRHNNW--STRHR--- 626
Query: 324 EWEAINDLRADMARLQQGMSHMQRMLEACMDMQLELQRSVRQEVSAALNRFIGEQGESKE 383
EW+AINDL+ADM RLQQGMS +QRMLEACMDMQLELQRSVRQEVSAALNRF G +G +
Sbjct: 627 EWDAINDLKADMGRLQQGMSSIQRMLEACMDMQLELQRSVRQEVSAALNRFAGPEGYPTD 686
Query: 384 TIDDGSKWIHVRKGTCCICCDTPIDSLLYRCGHMCTCSKCANELVRSGGKCPLCRAPIIE 443
DDGSKW VRKGTCC+CCD IDSLLYRCGHMCTCSKCANEL+RSGGKCPLCRAPI E
Sbjct: 687 LSDDGSKWDQVRKGTCCVCCDAQIDSLLYRCGHMCTCSKCANELIRSGGKCPLCRAPIAE 746
Query: 444 VIRAYFIM 451
V+RAY +M
Sbjct: 747 VVRAYSVM 754
>Os03g0107500 Conserved hypothetical protein
Length = 896
Score = 189 bits (480), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 108/222 (48%), Positives = 139/222 (62%), Gaps = 13/222 (5%)
Query: 197 RRANTFVPADDDNVYSTELRELLSRRSVSNLLHSAFRENLDRLIRSYVERQGR--APLSW 254
R N F P DDD VY ELRELLSRRSVSNLL S FRE+LD+LI+SYV RQ PL W
Sbjct: 397 RNINRFSPPDDD-VYGVELRELLSRRSVSNLLRSGFRESLDQLIQSYVRRQEEHDDPLDW 455
Query: 255 DLE--GAPPAPDSPEQSQEQHRDEEEQELHDNVXXXXXXXXXXXXXXXXXXWHSEL--HR 310
D + G S +Q +++ + Q + D W EL H
Sbjct: 456 DYQRQGTATGLHSDDQGEDRIDEATNQTVSDT------RDHQPSILPQQRHWQMELPHHH 509
Query: 311 NNWIRQNIHRSDIEWEAINDLRADMARLQQGMSHMQRMLEACMDMQLELQRSVRQEVSAA 370
+NW +Q + S+++W+AI+ LR D+ LQ+GM+ MQ+MLEACM+MQ+ELQRS++QEVSAA
Sbjct: 510 HNWSQQAMRHSELDWDAIHVLRDDLTGLQRGMTSMQQMLEACMEMQMELQRSIKQEVSAA 569
Query: 371 LNRFIGEQGESKETIDDGSKWIHVRKGTCCICCDTPIDSLLY 412
LNR + + ++DGS+W RKGTCCICCD IDSLLY
Sbjct: 570 LNRSLAVPAGEEGMLEDGSEWKLARKGTCCICCDRQIDSLLY 611
>Os07g0499800 Zinc finger, RING-type domain containing protein
Length = 752
Score = 101 bits (252), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 79/119 (66%), Gaps = 9/119 (7%)
Query: 331 LRADMARLQQGMSHMQRMLEACMDMQLELQRSVRQEVSAALNRFIGEQGESKETIDDGSK 390
+R++MA++ + +++++E+C+ Q+++Q S+++E+ +AL E G D +K
Sbjct: 641 VRSEMAQVHHEIYELRKLVESCIASQVKIQHSIKEEMCSALR----EAGLMPSQPDTPAK 696
Query: 391 WIHVRKGTCCICCDTPIDSLLYRCGHMCTCSKCANELVRSGGKCPLCRAPIIEVIRAYF 449
+G+CCIC T +DSLLYRCGHMCTC CA++L S CP+C++PI +V+RA+
Sbjct: 697 -----RGSCCICHQTQVDSLLYRCGHMCTCFNCADQLKSSNRSCPICQSPIEDVVRAHM 750
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.130 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,444,944
Number of extensions: 820019
Number of successful extensions: 3277
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 3260
Number of HSP's successfully gapped: 4
Length of query: 451
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 347
Effective length of database: 11,605,545
Effective search space: 4027124115
Effective search space used: 4027124115
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 158 (65.5 bits)