Os07g0499800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os07g0499800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 379.55 | 0.915 | 4.3 | 0.634 | 0.392 | -0.85 | -1.01 | -1.06 | 0.519 | 7.2 | 80 | 10 | -- | -- |
| 381.14 | 0.909 | 4.3 | 0.647 | 0.4 | -0.938 | -0.999 | -- | 0.512 | 7.87 | 80 | 10 | -- | -- |
| 381.59 | 0.91 | 4.3 | 0.618 | 0.397 | -0.973 | -- | -1.13 | 0.518 | 8.65 | 81.22 | 7 | -- | -- |
| 383.74 | 0.912 | 4.3 | 0.624 | 0.402 | -1 | -- | -- | 0.517 | 8.63 | 80.24 | 10 | -- | -- |
| 389.63 | 0.919 | 4.31 | 0.621 | -- | -0.888 | -- | -1.17 | 0.519 | -- | 80.58 | 31 | -- | -- |
| 396.03 | 0.933 | 4.29 | 0.58 | 0.567 | -- | -0.797 | -- | 0.551 | 5.53 | -- | -- | -- | -- |
| 397.52 | 0.934 | 4.29 | 0.576 | 0.563 | -- | -- | -- | 0.554 | 5.28 | -- | -- | -- | -- |
| 391.6 | 0.922 | 4.31 | 0.634 | -- | -0.886 | -- | -- | 0.516 | -- | 80 | 63 | -- | -- |
| 393.92 | 0.924 | 4.31 | -- | 0.413 | -0.944 | -- | -- | 0.455 | 8.1 | 80 | 7 | -- | -- |
| 414.06 | 0.951 | 4.3 | 0.596 | -- | -- | -- | -- | 0.568 | -- | -- | -- | -- | -- |
| 406.28 | 0.943 | 4.3 | -- | 0.573 | -- | -- | -- | 0.49 | 5.25 | -- | -- | -- | -- |
| 402.14 | 0.934 | 4.32 | -- | -- | -0.856 | -- | -- | 0.449 | -- | 80.41 | 63 | -- | -- |
| 423.42 | 0.96 | 4.31 | -- | -- | -- | -- | -- | 0.502 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 364.24 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 17 |
| 3 | 365.39 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 17 |
| 4 | 365.65 | humidity | 70.0 | 90 | > th | dose independent | rect. | 3 | 20 |
| 10 | 367.00 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 17 |
| 11 | 367.00 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 5 | 18 |
| 13 | 367.23 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 22 | 5 |
| 20 | 368.15 | temperature | 15.0 | 270 | > th | dose independent | rect. | 3 | 18 |
| 28 | 368.50 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 18 |
| 30 | 368.55 | atmosphere | 1000.0 | 270 | > th | dose dependent | rect. | 23 | 2 |
| 37 | 368.76 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 39 | 368.93 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 46 | 369.15 | radiation | 30.0 | 43200 | > th | dose independent | rect. | 11 | 2 |
| 47 | 369.19 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 23 | 2 |
| 49 | 369.30 | wind | 1.0 | 270 | > th | dose independent | rect. | 22 | 5 |
| 54 | 369.44 | radiation | 1.0 | 90 | > th | dose independent | rect. | 8 | 11 |
| 65 | 369.51 | wind | 7.0 | 270 | < th | dose independent | rect. | 21 | 6 |
| 66 | 369.51 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 17 |
| 67 | 369.52 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 24 | 5 |
| 74 | 369.68 | wind | 3.0 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 75 | 369.68 | wind | 1.0 | 270 | > th | dose independent | rect. | 23 | 2 |
| 79 | 369.73 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 83 | 369.77 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 17 | 14 |
| 84 | 369.82 | radiation | 1.0 | 270 | < th | dose independent | sin | 0 | NA |
| 86 | 369.82 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 24 | 4 |
| 87 | 369.84 | temperature | 10.0 | 270 | > th | dose independent | rect. | 21 | 6 |
| 88 | 369.84 | temperature | 30.0 | 270 | < th | dose independent | rect. | 21 | 6 |
| 89 | 369.84 | humidity | 50.0 | 270 | > th | dose independent | rect. | 21 | 6 |
| 92 | 369.84 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 21 | 6 |
| 93 | 369.84 | radiation | 1.0 | 270 | < th | dose independent | rect. | 21 | 6 |
| 99 | 369.84 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 21 | 6 |
| 150 | 370.06 | temperature | 15.0 | 270 | > th | dose independent | rect. | 1 | 22 |
| 153 | 370.10 | humidity | 80.0 | 30 | < th | dose independent | rect. | 9 | 9 |
| 155 | 370.13 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 21 | 6 |
| 172 | 370.13 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 21 | 6 |
| 173 | 370.14 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 2 | 20 |
| 177 | 370.17 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 21 | 2 |
| 179 | 370.20 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 5 | 5 |
| 182 | 370.22 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 11 | 2 |
| 184 | 370.23 | radiation | 40.0 | 270 | < th | dose independent | rect. | 13 | 9 |
| 203 | 370.26 | wind | 9.0 | 270 | < th | dose independent | rect. | 3 | 18 |
| 210 | 370.29 | wind | 1.0 | 43200 | < th | dose independent | rect. | 22 | 4 |
| 212 | 370.35 | radiation | 40.0 | 43200 | < th | dose dependent | rect. | 11 | 2 |
| 214 | 370.36 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 22 | 5 |
| 215 | 370.39 | radiation | 20.0 | 43200 | > th | dose dependent | rect. | 11 | 2 |
| 216 | 370.40 | radiation | 40.0 | 43200 | > th | dose independent | sin | 16 | NA |
| 220 | 370.42 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 18 |
| 247 | 370.49 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 10 |
| 249 | 370.49 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 10 |
| 312 | 370.66 | wind | 7.0 | 270 | < th | dose independent | rect. | 22 | 4 |
| 344 | 370.76 | wind | 1.0 | 14400 | < th | dose independent | rect. | 7 | 3 |
| 363 | 370.79 | wind | 1.0 | 14400 | > th | dose independent | rect. | 7 | 3 |
| 369 | 370.81 | temperature | 15.0 | 270 | > th | dose independent | rect. | 17 | 14 |
| 371 | 370.82 | wind | 1.0 | 43200 | > th | dose independent | rect. | 23 | 3 |
| 377 | 370.83 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 21 | 6 |
| 378 | 370.83 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 6 | 3 |
| 380 | 370.86 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 22 | 4 |
| 407 | 370.91 | radiation | 30.0 | 43200 | > th | dose independent | rect. | 15 | 23 |
| 428 | 370.95 | radiation | 30.0 | 43200 | > th | dose independent | no | NA | NA |
| 596 | 371.02 | radiation | 1.0 | 270 | < th | dose dependent | sin | 0 | NA |
| 607 | 371.05 | temperature | 30.0 | 43200 | > th | dose dependent | rect. | 18 | 15 |
| 617 | 371.08 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 11 | 16 |
| 694 | 371.10 | humidity | 50.0 | 270 | > th | dose independent | rect. | 17 | 14 |
| 803 | 371.12 | wind | 1.0 | 43200 | < th | dose independent | rect. | 21 | 6 |
| 805 | 371.13 | humidity | 50.0 | 270 | > th | dose independent | rect. | 14 | 8 |
| 839 | 371.23 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 869 | 371.27 | wind | 3.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 897 | 371.30 | temperature | 30.0 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 964 | 371.35 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 15 | 2 |
| 981 | 371.35 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 23 | 9 |
| 986 | 371.36 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 23 | 7 |