FiT-DB / Search/ Help/ Sample detail

Os09g0570500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RING-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.18 (0.0177) R2 : 0.575
β1 : 0.927 (0.0658) R2dD : 0.203 R2D : 0.267
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.2 (0.0731) R2dE : 0.28 R2E : 0.377
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0927 (0.0391) R2dN8 : 0.00811 R2N8 : 0.0137
σ : 0.327
deviance : 49.44
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 18
memory length : 4
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
46.95 0.322 7.18 0.942 0.218 1.36 -0.293 0.365 0.0778 3.9 18 4 -- --
47.07 0.32 7.19 0.892 0.214 1.37 -0.425 -- 0.0617 3.89 18 4 -- --
47.13 0.32 7.18 0.976 0.222 1.37 -- 0.594 0.0875 3.72 18 4 -- --
47.52 0.321 7.19 0.88 0.222 1.4 -- -- 0.0595 3.64 18 4 -- --
49.04 0.326 7.17 1.03 -- 1.18 -- 0.633 0.126 -- 17.9 4 -- --
72.59 0.399 7.14 1.17 0.281 -- 0.483 -- 0.287 13.8 -- -- -- --
73.44 0.401 7.14 1.18 0.281 -- -- -- 0.289 13.3 -- -- -- --
49.44 0.327 7.18 0.927 -- 1.2 -- -- 0.0927 -- 18 4 -- --
66.03 0.378 7.22 -- 0.355 1.79 -- -- -0.0875 3.33 17.54 13 -- --
78.32 0.414 7.14 1.17 -- -- -- -- 0.283 -- -- -- -- --
110.32 0.491 7.17 -- 0.261 -- -- -- 0.157 13.1 -- -- -- --
71.04 0.393 7.21 -- -- 1.49 -- -- -0.0399 -- 17.14 12 -- --
114.56 0.5 7.17 -- -- -- -- -- 0.153 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 43.99 temperature 25 1440 < th dose dependent rect. 5 6
14 44.84 temperature 25 1440 < th dose dependent rect. 23 12
37 45.33 temperature 25 1440 < th dose dependent rect. 7 1
50 45.49 temperature 30 270 < th dose dependent rect. 7 22
54 45.56 temperature 25 1440 < th dose dependent sin 7 NA
72 45.85 temperature 10 720 > th dose dependent rect. 20 20
83 46.02 temperature 20 1440 > th dose independent rect. 23 10
88 46.08 temperature 10 1440 > th dose dependent rect. 23 10
91 46.09 temperature 20 1440 < th dose independent rect. 23 10
97 46.10 temperature 10 270 > th dose dependent rect. 2 23
118 46.23 temperature 20 1440 < th dose independent rect. 23 6
152 46.31 temperature 20 1440 > th dose independent rect. 23 6
154 46.31 temperature 30 90 < th dose dependent rect. 9 20
161 46.35 temperature 30 1440 < th dose dependent rect. 23 2
174 46.41 temperature 10 1440 > th dose dependent rect. 23 2
222 46.52 temperature 30 1440 < th dose dependent rect. 23 5
235 46.56 temperature 10 1440 > th dose dependent rect. 23 5
408 46.89 temperature 20 1440 < th dose independent rect. 3 1
424 46.92 temperature 25 1440 < th dose dependent rect. 3 1
437 46.95 temperature 20 1440 > th dose independent sin 7 NA
463 47.00 temperature 15 1440 > th dose dependent rect. 3 1
492 47.04 temperature 30 270 < th dose dependent rect. 19 22
523 47.10 temperature 20 1440 < th dose independent sin 8 NA
537 47.13 temperature 15 1440 > th dose dependent sin 8 NA
627 47.29 temperature 15 1440 > th dose dependent rect. 5 2
641 47.31 temperature 30 10 < th dose dependent rect. 9 21
792 47.63 wind 3 43200 < th dose dependent rect. 23 1
803 47.66 temperature 15 10 > th dose dependent no NA NA
821 47.69 temperature 20 90 > th dose dependent rect. 5 20
870 47.81 temperature 25 1440 < th dose dependent no NA NA
896 47.87 temperature 25 1440 < th dose dependent rect. 5 23
923 47.93 temperature 25 1440 < th dose dependent rect. 2 23