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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0107500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.77 (0.131) R2 : 0.131
β1 : -4.24 (0.753) R2dD : 1.53 R2D : -3
β2 : -- (--) R2dC : -- R2C : --
β3 : 280 (41.6) R2dE : 277 R2E : -275
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -1630 (243) R2dD*E : 276 R2D*E : -277
γ1 : -0.00992 (0.0893) R2dN8 : 5.77e-06 R2N8 : -0.983
σ : 0.787
deviance : 282.29
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_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 1000
memory length : 11
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 1.02
open length of G : 1.16

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
277.87 0.776 3.76 -4.12 0.106 275 0.94 -1600 -0.00782 23.3 1000 10 1 1
304.42 0.819 2.94 0.713 0.131 1.23 0.973 -- -0.0146 23.6 1000 10 1 1
281.42 0.787 3.77 -4.21 0.12 278 -- -1620 -0.0128 1.56 1000 11 1.02 1.16
299.66 0.806 2.94 0.69 0.0566 1.85 -- -- 0.015 23.7 1010 4 1.02 1.47
282.29 0.787 3.77 -4.24 -- 280 -- -1630 -0.00992 -- 1000 11 1.02 1.16
306.14 0.82 2.95 0.723 0.146 -- 0.996 -- -0.0184 23.8 -- -- -- --
310.15 0.825 2.95 0.68 0.16 -- -- -- -0.0245 1.7 -- -- -- --
299.79 0.806 2.94 0.688 -- 1.89 -- -- 0.0146 -- 1010 13 1.02 1.3
311.98 0.823 2.95 -- 0.0714 1.85 -- -- -0.0619 0.828 1009 14 1.27 1.52
311.71 0.825 2.94 0.687 -- -- -- -- -0.0209 -- -- -- -- --
322.36 0.84 2.96 -- 0.172 -- -- -- -0.1 1.82 -- -- -- --
312.28 0.823 2.95 -- -- 1.9 -- -- -0.0621 -- 1010 14 1.23 1.51
324.16 0.84 2.96 -- -- -- -- -- -0.0971 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 277.87 atmosphere 1000.0 10 < th dose independent rect. 1 1
8 277.87 atmosphere 1000.0 10 < th dose dependent rect. 1 1
17 281.20 radiation 10.0 10 < th dose dependent rect. 12 1
26 283.49 precipitation 0.1 10 < th dose independent rect. 2 23
27 283.49 precipitation 0.1 10 < th dose dependent rect. 2 23
29 284.54 temperature 25.0 10 < th dose independent rect. 1 1
32 285.26 precipitation 0.1 270 < th dose independent rect. 2 11
33 285.26 precipitation 0.1 270 < th dose dependent rect. 2 11
36 285.54 precipitation 0.1 270 > th dose dependent rect. 22 6
37 285.58 temperature 25.0 90 < th dose independent rect. 1 1
43 285.94 atmosphere 1010.0 90 < th dose dependent rect. 24 1
50 286.47 precipitation 0.1 270 > th dose independent rect. 22 6
52 286.55 radiation 10.0 30 < th dose independent rect. 11 2
58 286.73 wind 1.0 90 < th dose dependent rect. 10 1
66 287.03 temperature 30.0 10 < th dose dependent rect. 1 1
67 287.05 humidity 80.0 10 > th dose independent rect. 1 1
90 287.44 precipitation 0.1 720 < th dose independent rect. 2 20
91 287.44 precipitation 0.1 720 < th dose dependent rect. 2 20
107 287.78 precipitation 0.1 720 < th dose independent rect. 18 20
108 287.78 precipitation 0.1 720 < th dose dependent rect. 18 20
127 288.22 precipitation 0.1 720 < th dose independent rect. 3 2
128 288.22 precipitation 0.1 720 < th dose dependent rect. 3 2
154 288.72 precipitation 0.1 720 < th dose independent rect. 17 14
155 288.72 precipitation 0.1 720 < th dose dependent rect. 17 14
160 288.77 precipitation 0.1 720 < th dose independent rect. 19 10
161 288.77 precipitation 0.1 720 < th dose dependent rect. 19 10
178 289.23 humidity 70.0 30 > th dose dependent rect. 1 1
182 289.36 wind 1.0 90 > th dose independent rect. 24 2
198 289.57 humidity 80.0 720 > th dose independent rect. 2 4
208 289.63 wind 1.0 10 > th dose independent rect. 1 1
216 289.80 wind 7.0 1440 < th dose independent rect. 2 1
220 289.92 precipitation 0.1 270 > th dose dependent sin 7 NA
234 290.19 precipitation 0.1 10 < th dose independent rect. 1 1
236 290.19 precipitation 0.1 10 < th dose dependent rect. 1 1
243 290.31 precipitation 0.1 270 < th dose independent sin 7 NA
245 290.31 precipitation 0.1 270 < th dose dependent sin 7 NA
247 290.35 precipitation 0.1 270 > th dose dependent rect. 21 19
255 290.46 precipitation 0.1 270 > th dose independent sin 7 NA
256 290.46 wind 5.0 30 < th dose independent rect. 1 1
262 290.48 temperature 10.0 1440 > th dose independent rect. 2 1
265 290.48 temperature 30.0 1440 < th dose independent rect. 2 1
269 290.48 humidity 50.0 1440 > th dose independent rect. 2 1
279 290.48 atmosphere 995.0 1440 > th dose independent rect. 2 1
280 290.48 radiation 1.0 1440 < th dose independent rect. 2 1
301 290.48 temperature 10.0 1440 > th dose independent rect. 3 23
304 290.48 radiation 1.0 1440 < th dose dependent rect. 2 1
324 290.49 precipitation 0.1 270 > th dose independent rect. 3 1
329 290.50 temperature 10.0 30 > th dose independent rect. 1 1
332 290.50 humidity 50.0 30 > th dose independent rect. 1 1
335 290.50 atmosphere 995.0 30 > th dose independent rect. 1 1
338 290.50 radiation 1.0 30 < th dose independent rect. 1 1
346 290.50 temperature 10.0 30 > th dose independent rect. 2 23
347 290.50 radiation 1.0 30 < th dose dependent rect. 1 1
354 290.51 precipitation 0.1 270 > th dose dependent rect. 3 1
386 290.66 wind 9.0 30 < th dose independent rect. 2 23
404 290.75 precipitation 0.1 10 < th dose independent rect. 3 12
405 290.75 precipitation 0.1 10 < th dose dependent rect. 3 12
479 291.17 wind 9.0 270 < th dose independent rect. 2 11
492 291.29 temperature 10.0 270 > th dose independent rect. 2 11
493 291.29 atmosphere 995.0 270 > th dose independent rect. 2 11
494 291.29 atmosphere 1015.0 270 < th dose independent rect. 2 11
495 291.29 temperature 10.0 270 > th dose independent rect. 13 13
504 291.40 wind 9.0 270 < th dose independent rect. 13 13
506 291.41 wind 3.0 270 > th dose dependent rect. 3 4
508 291.44 wind 3.0 90 > th dose dependent rect. 24 9
510 291.47 wind 3.0 10 > th dose independent rect. 1 4
529 291.59 radiation 1.0 720 < th dose dependent rect. 2 4
538 291.68 precipitation 0.1 720 < th dose independent rect. 23 15
540 291.68 precipitation 0.1 720 < th dose dependent rect. 23 15
546 291.76 temperature 25.0 10 < th dose independent rect. 24 11
604 291.86 wind 9.0 30 < th dose dependent rect. 1 1
605 291.89 radiation 40.0 270 < th dose independent rect. 13 13
648 291.99 precipitation 0.1 720 < th dose independent rect. 10 20
649 291.99 precipitation 0.1 720 < th dose dependent rect. 10 20
650 292.01 atmosphere 995.0 270 > th dose independent rect. 13 13
670 292.08 radiation 1.0 720 < th dose independent rect. 2 4
743 292.24 wind 9.0 90 < th dose independent rect. 11 13
745 292.26 wind 9.0 90 < th dose independent rect. 24 11
749 292.28 temperature 10.0 90 > th dose independent rect. 24 11
750 292.28 atmosphere 995.0 90 > th dose independent rect. 24 11
751 292.28 temperature 10.0 90 > th dose independent rect. 11 13
752 292.29 atmosphere 1015.0 90 < th dose independent rect. 24 11
755 292.30 humidity 50.0 720 > th dose dependent rect. 2 4
765 292.36 precipitation 0.1 720 < th dose independent rect. 11 18
767 292.36 precipitation 0.1 720 < th dose dependent rect. 11 18
774 292.41 wind 1.0 90 > th dose independent rect. 15 11
838 292.73 wind 3.0 90 > th dose independent rect. 24 9
847 292.80 humidity 80.0 270 < th dose dependent rect. 6 1
848 292.82 temperature 20.0 90 < th dose independent rect. 8 1
860 292.87 humidity 50.0 270 > th dose independent rect. 10 12
865 292.92 radiation 30.0 43200 < th dose dependent rect. 20 6
872 292.96 wind 1.0 270 < th dose dependent rect. 2 1
879 293.03 humidity 80.0 270 < th dose independent rect. 6 1
895 293.08 wind 1.0 30 < th dose independent rect. 17 1
906 293.08 wind 1.0 30 < th dose dependent rect. 17 1
930 293.15 humidity 50.0 90 > th dose independent rect. 24 11
936 293.19 wind 3.0 30 > th dose dependent rect. 1 4
945 293.23 atmosphere 995.0 720 > th dose independent rect. 14 3
946 293.23 temperature 20.0 720 > th dose independent rect. 14 5
949 293.25 wind 3.0 90 > th dose dependent rect. 1 6
989 293.35 atmosphere 1015.0 1440 < th dose independent rect. 2 1
999 293.45 wind 1.0 90 > th dose dependent rect. 1 1