BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0107500 Os03g0107500|Os03g0107500
         (896 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G04460.1  | chr5:1260009-1263695 FORWARD LENGTH=864            149   6e-36
AT2G27950.1  | chr2:11899422-11903171 REVERSE LENGTH=840          130   3e-30

>AT5G04460.1 | chr5:1260009-1263695 FORWARD LENGTH=864
          Length = 863

 Score =  149 bits (376), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 95/216 (43%), Positives = 120/216 (55%), Gaps = 19/216 (8%)

Query: 406 DDDVYGXXXXXXXXXXXXXXXXXXGFRESLDQLIQSYV-RRQEEHDDPLDWDYQRQGTAT 464
           DD+VY                   GFRESLDQLIQSY  RR   H   +DWD        
Sbjct: 618 DDNVYSMELRELLSRRSVSNLLHSGFRESLDQLIQSYAERRGHTH---VDWDLHANLQTA 674

Query: 465 GLHSDDQGED-----RIDEATNQTVSDTRDHQPSILPQQRHWQMELPHHHHNWSQQAMRH 519
              S ++  D     R D   N          P   P Q  W  +L  HH +WS+ +M  
Sbjct: 675 IPDSPERDTDHQVFVRNDNQLNGINGSQLLPTPPAPPPQPIWHQDL--HHTSWSRHSMHR 732

Query: 520 SELDWDAIHVLRDDLTGLQRGMTSMQQMLEACMEMQMELQRSIKQEVSAALNRSLAVPAG 579
           SE++W+ ++ LR D+  LQ+GM+ MQ+MLEACM+MQ+ELQRS++QEVSAALNRS    AG
Sbjct: 733 SEIEWEVMNDLRGDVARLQQGMSQMQRMLEACMDMQLELQRSVRQEVSAALNRS----AG 788

Query: 580 EEGML----EDGSEWKLARKGTCCICCDRQIDSLLY 611
           ++GM     EDGS W    KGTCC+CCD  ID+LLY
Sbjct: 789 DQGMSAETSEDGSRWSHVSKGTCCVCCDNHIDALLY 824




 Score = 80.9 bits (198), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/74 (59%), Positives = 50/74 (67%)

Query: 166 DVVTRMAMERQRELQGLSDHRAVSAFAHRARIQSFLRGRSFHSGSPMHDERPLSMAAREL 225
           D++ R   ERQRELQGL +HRAVS FAHR RIQS LRGR   +  P   ER  SMA+REL
Sbjct: 364 DLLMRAERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRNERPTVPERTPSMASREL 423

Query: 226 GQLRQSHPVSRFRE 239
            QLR+   VS  RE
Sbjct: 424 LQLRERQTVSGLRE 437



>AT2G27950.1 | chr2:11899422-11903171 REVERSE LENGTH=840
          Length = 839

 Score =  130 bits (327), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 79/192 (41%), Positives = 112/192 (58%), Gaps = 19/192 (9%)

Query: 430 GFRESLDQLIQSYVRRQEEHDDPLDW-------DYQRQGTATGLHSDDQ-GEDRIDEATN 481
           GFRE+L QLIQSY+ R+ +  +P+DW       D+   G  T    D Q G   +D   +
Sbjct: 618 GFRENLSQLIQSYMDRRSQ--NPVDWEEAETYSDHTIVGEDTEQQDDAQSGGQELDAVES 675

Query: 482 QTVSDTRDHQPS-ILPQQRHWQMELPHHHHNWSQQAMRHS-ELDWDAIHVLRDDLTGLQR 539
             ++      PS ++P Q  W  +    H NW    +     +DWD+I+ LR D+  +Q+
Sbjct: 676 PPLT-----LPSPVIPIQPRWDHD--RSHSNWPAHDLHQGIGMDWDSINDLRVDMGRIQQ 728

Query: 540 GMTSMQQMLEACMEMQMELQRSIKQEVSAALNRSLAVPAGEEGMLEDGSEWKLARKGTCC 599
            M ++Q+MLEACMEMQ+ELQRSI+QEVSAA++RS   P   +      S+W+  RKG CC
Sbjct: 729 RMDNLQRMLEACMEMQLELQRSIRQEVSAAMHRSTDQPGPSKDTASYESKWEYVRKGICC 788

Query: 600 ICCDRQIDSLLY 611
           +CC+  IDSLLY
Sbjct: 789 VCCESNIDSLLY 800




 Score = 85.5 bits (210), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 46/88 (52%), Positives = 56/88 (63%)

Query: 166 DVVTRMAMERQRELQGLSDHRAVSAFAHRARIQSFLRGRSFHSGSPMHDERPLSMAAREL 225
           D++    MERQREL+GL  H AVS FAHR RIQ+ LRGR   +G     E+P S AA EL
Sbjct: 243 DMLKMAEMERQRELEGLMQHHAVSNFAHRNRIQALLRGRFLRNGDNDDKEKPTSSAATEL 302

Query: 226 GQLRQSHPVSRFREEVRSRTEVTTNGPA 253
           G LR+ H VS  REE  SR + + +G A
Sbjct: 303 GFLRERHTVSELREEFISRLDRSASGQA 330



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.130    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 16,653,432
Number of extensions: 647547
Number of successful extensions: 1964
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1961
Number of HSP's successfully gapped: 4
Length of query: 896
Length of database: 11,106,569
Length adjustment: 107
Effective length of query: 789
Effective length of database: 8,173,057
Effective search space: 6448541973
Effective search space used: 6448541973
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 116 (49.3 bits)