BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0522000 Os09g0522000|AF300972
(218 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0522000 Similar to CBF-like protein 288 3e-78
Os09g0522200 DRE-binding protein 1A 99 2e-21
Os08g0545400 Similar to CRT/DRE binding factor (Transcripti... 91 6e-19
Os08g0545500 Similar to DRE-binding protein 1A 70 1e-12
>Os09g0522000 Similar to CBF-like protein
Length = 218
Score = 288 bits (736), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 155/218 (71%), Positives = 155/218 (71%)
Query: 1 MEVEEAAYRTVWSEPPKRPAGRTKFRETXXXXXXXXXXXXXXXXXXXXWVCEVRVPGARG 60
MEVEEAAYRTVWSEPPKRPAGRTKFRET WVCEVRVPGARG
Sbjct: 1 MEVEEAAYRTVWSEPPKRPAGRTKFRETRHPVYRGVRRRGGRPGAAGRWVCEVRVPGARG 60
Query: 61 SRLWLGTFXXXXXXXXXXXXXXXXXXXXXXXXNFADSAWRMPPVPASXXXXXXXXXXXXX 120
SRLWLGTF NFADSAWRMPPVPAS
Sbjct: 61 SRLWLGTFATAEAAARAHDAAALALRGRAACLNFADSAWRMPPVPASAALAGARGVRDAV 120
Query: 121 XXXXXXFQRQSAAPSSPAETFANDGDEEEDNKDVLPVAAAEVFDAGAFELDDGFRFGGMD 180
FQRQSAAPSSPAETFANDGDEEEDNKDVLPVAAAEVFDAGAFELDDGFRFGGMD
Sbjct: 121 AVAVEAFQRQSAAPSSPAETFANDGDEEEDNKDVLPVAAAEVFDAGAFELDDGFRFGGMD 180
Query: 181 AGSYYASLAQGLLVEPPAAGAWWEDGELAGSDMPLWSY 218
AGSYYASLAQGLLVEPPAAGAWWEDGELAGSDMPLWSY
Sbjct: 181 AGSYYASLAQGLLVEPPAAGAWWEDGELAGSDMPLWSY 218
>Os09g0522200 DRE-binding protein 1A
Length = 238
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 100/237 (42%), Gaps = 44/237 (18%)
Query: 5 EAAYRTVWSEPPKRPAGRTKFRETXXXXXXXXXXXXXXXXXXXXWVCEVRVPGARGSRLW 64
E ++TVW+ PPKRPAGRTKFRET WVCEVRVPG RG RLW
Sbjct: 23 ERQHQTVWTAPPKRPAGRTKFRETRHPVFRGVRRRGNAGR----WVCEVRVPGRRGCRLW 78
Query: 65 LGTFXXXXXXXXXXXXXXXXXXX------XXXXXNFADSAWRMPPVPASXXXXXXXXXXX 118
LGTF NFADSAW + VP S
Sbjct: 79 LGTFDTAEGAARAHDAAMLAINAGGGGGGGACCLNFADSAW-LLAVPRS-YRTLADVRHA 136
Query: 119 XXXXXXXXFQRQSAAPSSPA-----------------ETFANDGDEEEDNKDVLPVAAAE 161
F+R+ A + A E+ A DGDE L
Sbjct: 137 VAEAVEDFFRRRLADDALSATSSSSTTPSTPRTDDDEESAATDGDESSSPASDL------ 190
Query: 162 VFDAGAFELDDGFRFGGMDAGSYYASLAQGLLVEPPAAGAWWEDGELAGSDMPLWSY 218
AFELD M YYASLAQG+L+EPP+A A +DG+ +D+PLWSY
Sbjct: 191 -----AFELD---VLSDMGWDLYYASLAQGMLMEPPSA-ALGDDGDAILADVPLWSY 238
>Os08g0545400 Similar to CRT/DRE binding factor (Transcription factor RCBF4)
Length = 236
Score = 90.9 bits (224), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 73/219 (33%), Positives = 92/219 (42%), Gaps = 27/219 (12%)
Query: 16 PKRPAGRTKFRETXXXXXXXXXXXXXXXXXXXXWVCEVRVPGARGSRLWLGTFXXXXXXX 75
PKRPAGRTKF+ET WVCEVRVPG+RG RLW+GTF
Sbjct: 28 PKRPAGRTKFQETRHPVFRGVRRRGRAGR----WVCEVRVPGSRGDRLWVGTFDTAEEAA 83
Query: 76 XXXXXXXXXXXXXXXXXNFADSAW--RMPPVPASXXXXXXXXXXXXXXXXXXXFQRQSA- 132
NFADSAW +P P + FQR+ +
Sbjct: 84 RAHDAAMLALCGASASLNFADSAWLLHVPRAPVASGHDQLPDVQRAASEAVAEFQRRGST 143
Query: 133 ----------APSSPAETFANDGDEEEDNKDVLPVAAAEVFDAGAFELDDGFRFGGMDAG 182
A S+ + + +DN A++ A A LD G FGGM
Sbjct: 144 AATATATSGDAASTAPPSSSPVLSPNDDN------ASSASTPAVAAALDHGDMFGGMRTD 197
Query: 183 SYYASLAQGLLVE----PPAAGAWWEDGELAGSDMPLWS 217
Y+ASLAQGLL+E P A + +D G++M LWS
Sbjct: 198 LYFASLAQGLLIEPPPPPTTAEGFCDDEGCGGAEMELWS 236
>Os08g0545500 Similar to DRE-binding protein 1A
Length = 251
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 83/213 (38%), Gaps = 27/213 (12%)
Query: 5 EAAYRTVWSEP--------PKRPAGRTKFRETXXXXXXXXXXXXXXXXXXXXWVCEVRVP 56
+AA T SEP KRPAGRTKF ET WVCEVRVP
Sbjct: 19 QAASTTSSSEPCRRLSPPSSKRPAGRTKFHETRHPVFRGVRRRGRAGR----WVCEVRVP 74
Query: 57 GARGSRLWLGTFXXXXXXXXXXXXXXXXXX-XXXXXXNFADSAWRMPPVPASXXXXXXXX 115
G RG RLWLGTF NFADSAW + P +
Sbjct: 75 GRRGCRLWLGTFDAADAAARAHDAAMLALRGRAAACLNFADSAWLLAVPPPATLRCAADV 134
Query: 116 XXXXXXXXXXXFQRQSAAPSSP---------AETFANDGDEEEDNKDVLPVAAAEVFD-- 164
QR+S++ P A + ++ D+ V ++ D
Sbjct: 135 QRAVARALEDFEQRESSSSVFPLAIDVVAEDAMSATSEPSAASDDDAVTSSSSTTDADEE 194
Query: 165 AGAFELDDGFRFGGMDAGSYYASLAQGLLVEPP 197
A FELD M YYASLA+GLL+EPP
Sbjct: 195 ASPFELD---VVSDMGWSLYYASLAEGLLMEPP 224
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.133 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,164,701
Number of extensions: 261100
Number of successful extensions: 918
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 905
Number of HSP's successfully gapped: 7
Length of query: 218
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 121
Effective length of database: 11,971,043
Effective search space: 1448496203
Effective search space used: 1448496203
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 154 (63.9 bits)