BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0488700 Os09g0488700|AK062303
(292 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0488700 Conserved hypothetical protein 591 e-169
Os10g0370100 Disease resistance protein family protein 340 5e-94
Os09g0281800 Conserved hypothetical protein 318 3e-87
Os08g0333100 Conserved hypothetical protein 307 6e-84
Os02g0717600 Conserved hypothetical protein 102 2e-22
>Os09g0488700 Conserved hypothetical protein
Length = 292
Score = 591 bits (1523), Expect = e-169, Method: Compositional matrix adjust.
Identities = 292/292 (100%), Positives = 292/292 (100%)
Query: 1 MRDSLRMPNSSSYLSMLVLPKALDLNSCRYESFEDTLARANAWIYSSQVSGIPIEFMNVQ 60
MRDSLRMPNSSSYLSMLVLPKALDLNSCRYESFEDTLARANAWIYSSQVSGIPIEFMNVQ
Sbjct: 1 MRDSLRMPNSSSYLSMLVLPKALDLNSCRYESFEDTLARANAWIYSSQVSGIPIEFMNVQ 60
Query: 61 SEALLTKISGETASATVNSGSLSDLSNVTNATLYGFEDYHGVDIGVVKAARLWYSSIAEE 120
SEALLTKISGETASATVNSGSLSDLSNVTNATLYGFEDYHGVDIGVVKAARLWYSSIAEE
Sbjct: 61 SEALLTKISGETASATVNSGSLSDLSNVTNATLYGFEDYHGVDIGVVKAARLWYSSIAEE 120
Query: 121 MPLEIPLEEGDTRLGFAISRTEEGFIFISSVVDNDKDNEAPSTRSGLRDLFNQAREASKL 180
MPLEIPLEEGDTRLGFAISRTEEGFIFISSVVDNDKDNEAPSTRSGLRDLFNQAREASKL
Sbjct: 121 MPLEIPLEEGDTRLGFAISRTEEGFIFISSVVDNDKDNEAPSTRSGLRDLFNQAREASKL 180
Query: 181 LVISRVSNEKVLPWMISSSGAIRCFDTISLSQKLSLHRLAVRPIQLHLLMWEKPSGPVER 240
LVISRVSNEKVLPWMISSSGAIRCFDTISLSQKLSLHRLAVRPIQLHLLMWEKPSGPVER
Sbjct: 181 LVISRVSNEKVLPWMISSSGAIRCFDTISLSQKLSLHRLAVRPIQLHLLMWEKPSGPVER 240
Query: 241 IIRSPKLPPQSELPQVPWNLIESIEPRVDVDEDYVGDLSFRIDDLSVGTSWV 292
IIRSPKLPPQSELPQVPWNLIESIEPRVDVDEDYVGDLSFRIDDLSVGTSWV
Sbjct: 241 IIRSPKLPPQSELPQVPWNLIESIEPRVDVDEDYVGDLSFRIDDLSVGTSWV 292
>Os10g0370100 Disease resistance protein family protein
Length = 1297
Score = 340 bits (873), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 175/250 (70%), Positives = 200/250 (80%), Gaps = 8/250 (3%)
Query: 1 MRDSLRMPNSSSYLSMLVLPKALDLNSCRYESFEDTLARANAWIYSSQVSGIPIEFMNVQ 60
M+DS+ MP+SS YLSMLVLP ALD+ S YESFE TLARAN W+Y+SQ SG+PI+ M+VQ
Sbjct: 1051 MQDSVHMPDSSCYLSMLVLPMALDMKSHLYESFEVTLARANTWLYASQASGVPIKLMSVQ 1110
Query: 61 SEALLTKIS--GETASATVNSGSLSDLSNVTNATLYGFEDYHGVDIGVVKAARLWYSSIA 118
S+ LLTKIS G+ SATVNSG L DLSN T EDY G + VVKAARLWYSSI
Sbjct: 1111 SDDLLTKISRVGDATSATVNSGLLPDLSNAT------LEDYQGYNTEVVKAARLWYSSIG 1164
Query: 119 EEMPLEIPLEEGDTRLGFAISRTEEGFIFISSVVDNDKDNEAPSTRSGLRDLFNQAREAS 178
EMPLEI + GDT+LGFAISRTEEGFI+ISSV+ +D D+E PSTRSG+ +LFN+AREAS
Sbjct: 1165 GEMPLEITPKVGDTKLGFAISRTEEGFIYISSVLQDDNDSETPSTRSGMHNLFNRAREAS 1224
Query: 179 KLLVISRVSNEKVLPWMISSSGAIRCFDTISLSQKLSLHRLAVRPIQLHLLMWEKPSGPV 238
KLLVISRVSNEKVLPWMISSSGAIRCFDT+S+SQKLSL R + QLHLLMWEKP P
Sbjct: 1225 KLLVISRVSNEKVLPWMISSSGAIRCFDTLSISQKLSLSRYPLCSFQLHLLMWEKPIHPA 1284
Query: 239 ERIIRSPKLP 248
ER I PK+P
Sbjct: 1285 ERSIHRPKMP 1294
>Os09g0281800 Conserved hypothetical protein
Length = 440
Score = 318 bits (815), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 153/232 (65%), Positives = 189/232 (81%), Gaps = 1/232 (0%)
Query: 1 MRDSLRMPNSSSYLSMLVLPKALDLNSCRYESFEDTLARANAWIYSSQVSGIPIEFMNVQ 60
M++ L +P +S +LSML+LPK+ D + RY+S EDTLARA+AW+ SSQ +G+P+ FMNVQ
Sbjct: 136 MKELLPVPAASCFLSMLLLPKSADGSHTRYKSLEDTLARADAWLVSSQAAGVPVAFMNVQ 195
Query: 61 SEALLTKISGETASATVNSGSLSDLSNVTNATLYGFEDYHGVDIGVVKAARLWYSSIAEE 120
+EALLTKISGE A +TVN GSLSDL+N+ NA+LYGFEDYHGVDIGVV+A RLWY+ +A E
Sbjct: 196 TEALLTKISGEMALSTVNMGSLSDLANMANASLYGFEDYHGVDIGVVRAVRLWYTPVAGE 255
Query: 121 MPLEIPLEEGDTRLGFAISRTEEGFIFISSVVDNDKDNEAPSTRSGLRDLFNQAREASKL 180
LEI L GDTRLGFAISRTEEGFI++SSV + A STRSGL +L AR AS+L
Sbjct: 256 AALEIKLLPGDTRLGFAISRTEEGFIYVSSVAEESTPGVA-STRSGLLELHRAARRASRL 314
Query: 181 LVISRVSNEKVLPWMISSSGAIRCFDTISLSQKLSLHRLAVRPIQLHLLMWE 232
LV+SRV EKVLPWM+S++G ++CFDT+SLSQKLSLHR A+RPI LH LMW+
Sbjct: 315 LVVSRVGGEKVLPWMVSTAGDVKCFDTVSLSQKLSLHRHALRPITLHFLMWD 366
>Os08g0333100 Conserved hypothetical protein
Length = 481
Score = 307 bits (787), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 147/233 (63%), Positives = 185/233 (79%), Gaps = 1/233 (0%)
Query: 1 MRDSLRMPNSSSYLSMLVLPKALDLNSCRYESFEDTLARANAWIYSSQVSGIPIEFMNVQ 60
MRD L++ +S +LS+L+LP+A D ++ S EDTLARA +W+ SSQ+SG+PI MNVQ
Sbjct: 177 MRDLLQVAGASGFLSLLLLPRATDETQTKFHSLEDTLARAESWLMSSQMSGVPIVPMNVQ 236
Query: 61 SEALLTKISGETASATVNSGSLSDLSNVTNATLYGFEDYHGVDIGVVKAARLWYSSIAEE 120
+EALLTKI G+ AS+TVN SL DL+N+ +LYGFEDYHGVDIGVV+A RLWY+ A E
Sbjct: 237 TEALLTKICGDVASSTVNMNSLGDLANMATVSLYGFEDYHGVDIGVVRAIRLWYAPFAGE 296
Query: 121 MPLEIPLEEGDTRLGFAISRTEEGFIFISSVVDNDKDNEAPSTRSGLRDLFNQAREASKL 180
M LEI L+ GDTRLGFAISRTEEGFI++SSV + A STRSGL +L+ +AR ASKL
Sbjct: 297 MALEIKLQPGDTRLGFAISRTEEGFIYVSSVAEESTPGVA-STRSGLLELYRRARRASKL 355
Query: 181 LVISRVSNEKVLPWMISSSGAIRCFDTISLSQKLSLHRLAVRPIQLHLLMWEK 233
LV+SRV ++KVLPW S++G IRCFDT+SLSQ+LSLHR A+RP+ LH LMWE+
Sbjct: 356 LVVSRVGDDKVLPWATSTAGDIRCFDTVSLSQRLSLHRHALRPVTLHFLMWER 408
>Os02g0717600 Conserved hypothetical protein
Length = 322
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/68 (72%), Positives = 58/68 (85%)
Query: 1 MRDSLRMPNSSSYLSMLVLPKALDLNSCRYESFEDTLARANAWIYSSQVSGIPIEFMNVQ 60
MR++L +PNSSS+LSMLVLP ALD + RY S EDTLARANAWI SSQ SG+PI F+NVQ
Sbjct: 235 MREALPIPNSSSFLSMLVLPTALDRAASRYNSVEDTLARANAWILSSQSSGVPISFLNVQ 294
Query: 61 SEALLTKI 68
+EALLTK+
Sbjct: 295 TEALLTKV 302
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.132 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,473,517
Number of extensions: 380529
Number of successful extensions: 929
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 925
Number of HSP's successfully gapped: 5
Length of query: 292
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 192
Effective length of database: 11,814,401
Effective search space: 2268364992
Effective search space used: 2268364992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)