Os02g0717600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0717600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61.71 | 0.369 | 13.3 | 2.16 | 2.49 | -1.12 | -1.25 | 2.38 | 0.509 | 21 | 25.4 | 949 | -- | -- |
| 62.98 | 0.37 | 13.3 | 1.71 | 2.46 | -0.867 | -1.07 | -- | 0.378 | 21.1 | 25.61 | 1012 | -- | -- |
| 66.76 | 0.381 | 13.3 | 2.11 | 2.47 | -1.09 | -- | 2.04 | 0.501 | 21 | 25.68 | 951 | -- | -- |
| 66.74 | 0.381 | 13.3 | 1.73 | 2.43 | -0.867 | -- | -- | 0.386 | 21.1 | 25.8 | 993 | -- | -- |
| 357.16 | 0.88 | 13.2 | 1.87 | -- | 0.785 | -- | 2.17 | 0.377 | -- | 24.42 | 629 | -- | -- |
| 83.51 | 0.428 | 13.3 | 1.47 | 2.23 | -- | -1.24 | -- | 0.338 | 21 | -- | -- | -- | -- |
| 88.75 | 0.441 | 13.3 | 1.51 | 2.24 | -- | -- | -- | 0.339 | 20.9 | -- | -- | -- | -- |
| 347.58 | 0.868 | 13.3 | 1.31 | -- | 0.977 | -- | -- | 0.228 | -- | 24.3 | 625 | -- | -- |
| 140.9 | 0.553 | 13.4 | -- | 2.31 | -0.467 | -- | -- | 0.11 | 21 | 28.71 | 1020 | -- | -- |
| 374.68 | 0.904 | 13.3 | 1.51 | -- | -- | -- | -- | 0.324 | -- | -- | -- | -- | -- |
| 149.1 | 0.571 | 13.4 | -- | 2.23 | -- | -- | -- | 0.17 | 21 | -- | -- | -- | -- |
| 391.41 | 0.921 | 13.3 | -- | -- | 1.22 | -- | -- | 0.0528 | -- | 24.1 | 639 | -- | -- |
| 435.13 | 0.974 | 13.3 | -- | -- | -- | -- | -- | 0.156 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 62.18 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 21 |
| 2 | 62.50 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 19 |
| 6 | 62.79 | temperature | 25 | 30 | < th | dose independent | rect. | 12 | 16 |
| 8 | 62.85 | temperature | 25 | 720 | > th | dose dependent | rect. | 9 | 15 |
| 37 | 63.26 | temperature | 25 | 720 | > th | dose dependent | rect. | 13 | 23 |
| 38 | 63.27 | temperature | 25 | 720 | > th | dose dependent | sin | 17 | NA |
| 80 | 63.66 | temperature | 25 | 720 | > th | dose dependent | rect. | 2 | 22 |
| 96 | 63.71 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 121 | 63.94 | temperature | 25 | 720 | > th | dose dependent | sin | 11 | NA |
| 130 | 64.03 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 153 | 64.35 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 10 |
| 178 | 64.46 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 5 |
| 182 | 64.47 | temperature | 30 | 720 | < th | dose independent | rect. | 12 | 21 |
| 184 | 64.47 | temperature | 25 | 1440 | > th | dose dependent | rect. | 9 | 9 |
| 186 | 64.47 | humidity | 50 | 1440 | > th | dose dependent | rect. | 9 | 13 |
| 302 | 64.62 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 4 |
| 339 | 64.65 | humidity | 50 | 1440 | > th | dose dependent | sin | 21 | NA |
| 356 | 64.67 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 374 | 64.69 | humidity | 90 | 1440 | < th | dose dependent | rect. | 9 | 14 |
| 381 | 64.70 | wind | 7 | 43200 | > th | dose independent | rect. | 15 | 23 |
| 387 | 64.70 | humidity | 50 | 1440 | > th | dose dependent | rect. | 6 | 16 |
| 388 | 64.71 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 23 |
| 463 | 64.81 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 23 |
| 483 | 64.84 | humidity | 90 | 1440 | < th | dose dependent | rect. | 6 | 17 |
| 492 | 64.85 | humidity | 90 | 1440 | < th | dose dependent | rect. | 2 | 20 |
| 507 | 64.87 | humidity | 80 | 1440 | < th | dose dependent | rect. | 13 | 19 |
| 510 | 64.88 | humidity | 90 | 1440 | < th | dose dependent | sin | 20 | NA |
| 522 | 64.90 | wind | 7 | 43200 | > th | dose dependent | sin | 15 | NA |
| 544 | 64.93 | wind | 9 | 43200 | < th | dose independent | sin | 15 | NA |
| 545 | 64.93 | humidity | 80 | 1440 | < th | dose dependent | sin | 15 | NA |
| 550 | 64.94 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 19 |
| 557 | 64.94 | humidity | 80 | 1440 | < th | dose dependent | rect. | 13 | 21 |
| 558 | 64.94 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 23 |
| 566 | 64.96 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 19 |
| 586 | 64.98 | wind | 7 | 43200 | < th | dose independent | rect. | 8 | 21 |
| 591 | 64.98 | humidity | 50 | 1440 | > th | dose dependent | rect. | 13 | 9 |
| 595 | 64.98 | wind | 5 | 43200 | > th | dose dependent | rect. | 17 | 23 |
| 607 | 65.00 | wind | 7 | 43200 | > th | dose independent | rect. | 19 | 21 |
| 608 | 65.00 | wind | 7 | 43200 | > th | dose independent | rect. | 19 | 23 |
| 640 | 65.03 | wind | 9 | 43200 | > th | dose dependent | rect. | 14 | 14 |
| 641 | 65.03 | humidity | 90 | 1440 | < th | dose dependent | rect. | 9 | 18 |
| 644 | 65.03 | humidity | 80 | 1440 | < th | dose dependent | rect. | 11 | 21 |
| 646 | 65.04 | wind | 5 | 43200 | < th | dose independent | sin | 2 | NA |
| 655 | 65.04 | humidity | 80 | 1440 | < th | dose dependent | rect. | 13 | 14 |
| 659 | 65.04 | humidity | 80 | 1440 | < th | dose dependent | rect. | 15 | 17 |
| 662 | 65.05 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 3 |
| 678 | 65.05 | wind | 5 | 43200 | > th | dose dependent | rect. | 19 | 23 |
| 702 | 65.08 | wind | 5 | 43200 | > th | dose independent | sin | 2 | NA |
| 703 | 65.08 | wind | 7 | 43200 | > th | dose independent | rect. | 1 | 22 |
| 704 | 65.08 | wind | 7 | 43200 | < th | dose independent | rect. | 1 | 22 |
| 733 | 65.09 | humidity | 80 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 742 | 65.10 | wind | 3 | 43200 | > th | dose dependent | sin | 3 | NA |
| 744 | 65.10 | humidity | 90 | 1440 | < th | dose dependent | rect. | 13 | 10 |
| 752 | 65.10 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 19 |
| 758 | 65.11 | wind | 7 | 43200 | < th | dose independent | rect. | 3 | 20 |
| 773 | 65.11 | wind | 5 | 43200 | > th | dose dependent | rect. | 9 | 21 |
| 780 | 65.12 | wind | 7 | 43200 | > th | dose independent | rect. | 3 | 23 |
| 781 | 65.12 | wind | 7 | 43200 | < th | dose independent | rect. | 3 | 23 |
| 788 | 65.12 | humidity | 80 | 1440 | < th | dose dependent | rect. | 15 | 12 |
| 799 | 65.12 | wind | 5 | 43200 | > th | dose dependent | rect. | 24 | 23 |
| 800 | 65.13 | wind | 7 | 43200 | > th | dose independent | no | NA | NA |
| 801 | 65.13 | wind | 7 | 43200 | < th | dose independent | no | NA | NA |
| 849 | 65.15 | wind | 5 | 43200 | < th | dose independent | rect. | 3 | 13 |
| 850 | 65.15 | wind | 7 | 43200 | > th | dose independent | rect. | 8 | 16 |
| 878 | 65.16 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 914 | 65.17 | wind | 7 | 43200 | < th | dose independent | rect. | 8 | 16 |
| 917 | 65.17 | humidity | 80 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 935 | 65.18 | wind | 9 | 43200 | > th | dose independent | sin | 15 | NA |
| 962 | 65.19 | wind | 5 | 43200 | > th | dose dependent | rect. | 3 | 23 |
| 964 | 65.20 | wind | 5 | 43200 | > th | dose independent | rect. | 3 | 13 |
| 973 | 65.20 | wind | 5 | 43200 | > th | dose dependent | no | NA | NA |
| 977 | 65.20 | wind | 7 | 43200 | > th | dose dependent | rect. | 12 | 17 |