BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0717600 Os02g0717600|J100090A12
         (322 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G12070.1  | chr4:7231941-7234272 FORWARD LENGTH=484            214   6e-56

>AT4G12070.1 | chr4:7231941-7234272 FORWARD LENGTH=484
          Length = 483

 Score =  214 bits (544), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 123/294 (41%), Positives = 166/294 (56%), Gaps = 76/294 (25%)

Query: 11  VVAIECVAGGSRAEEWGPGSSETVQTGDVVEEILIXXXXXXXXXXXXXPFKGGRAAVQRL 70
           V++I+C+ G S++EEW   S + +QTGD+VEEI I             PFKGG+A +Q++
Sbjct: 19  VLSIDCLKGSSKSEEW---SGDMLQTGDIVEEIRIGSGPGSAIFKA--PFKGGKAWLQKV 73

Query: 71  LHSAYKRGDTSVEVRVRRPAHAQQLVTTSGELLPSPXXXXXXXXXXRMQACIVPQEXXXX 130
           LH++++  +TS+ VRVRR +                           + ACIVP E    
Sbjct: 74  LHNSFRNKETSIVVRVRRGSD----------------------DFSDLSACIVPNESAG- 110

Query: 131 XXXXXXXXXXRSRQYVLRSIRDPNYAVGFVDRMESECIAIRVWGYDQNILGLMYDRVRIA 190
                       RQY+LRSI DPNY VGF DR ES+C+ ++                   
Sbjct: 111 -----------KRQYMLRSIDDPNYTVGFSDRTESDCLGLQ------------------- 140

Query: 191 RAGDNIVVGVGGWRAAGSRSSRVVCALSKAQLQDGYVAYPWEKKMREALPIPNSSSFLSM 250
                            SR SR+V AL KA+LQDGYV+YPWE++M+EALPI  SS+FLS+
Sbjct: 141 ----------------ESRGSRMVEALVKAKLQDGYVSYPWERRMQEALPISGSSNFLSI 184

Query: 251 LVLP--TALDRAASRYNSVEDTLARANAWILSSQSSGVPISFLNVQTEALLTKV 302
           L LP  +A  R  SRYN +EDTLARANAW+  SQ++GVPI F+N+QTE+LLTK+
Sbjct: 185 LFLPKASAYGRTGSRYNDLEDTLARANAWLSCSQANGVPIVFMNIQTESLLTKI 238



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.132    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,663,167
Number of extensions: 188222
Number of successful extensions: 445
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 442
Number of HSP's successfully gapped: 3
Length of query: 322
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 223
Effective length of database: 8,392,385
Effective search space: 1871501855
Effective search space used: 1871501855
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)