Os08g0333100 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0333100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	5.29	(0.0237)	R²	:	0.672
β₁	:	2.21	(0.1)	R²_dD	:	0.517	R²_D	:	0.0922
β₂	:	0.811	(0.0566)	R²_dC	:	0.149	R²_C	:	0.11
β₃	:	2.24	(0.11)	R²_dE	:	0.486	R²_E	:	-0.00685
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	0.01	(0.0562)	R²_dN8	:	4.57e-05	R²_N8	:	-0.00414
σ	:	0.429
deviance	:	84.66
__

_____

C
peak time of C	:	2.6
E
wheather	:	temperature
threshold	:	23.52
memory length	:	3831
response mode	:	< th
dose dependency	:	dose dependent
G
type of G	:	no
peak or start time of G	:	--
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
82.56	0.427	5.26	2.34	0.813	2.04	0.615	-0.867	0.0465	2.59	24.1	3848	--	--
83.18	0.425	5.28	2.21	0.809	2.21	0.67	--	0.0137	2.56	23.68	3826	--	--
83.88	0.427	5.26	2.33	0.814	2.04	--	-0.908	0.0433	2.59	24	3845	--	--
84.66	0.429	5.29	2.21	0.811	2.24	--	--	0.01	2.6	23.52	3831	--	--
119.43	0.509	5.26	2.39	--	2.03	--	-0.845	0.0406	--	23.59	4689	--	--
158.71	0.591	5.41	1.12	0.703	--	0.786	--	-0.545	2.83	--	--	--	--
160.83	0.594	5.41	1.1	0.706	--	--	--	-0.549	2.83	--	--	--	--
119.77	0.51	5.29	2.31	--	2.26	--	--	0.0144	--	23.07	4694	--	--
157.13	0.587	5.39	--	0.231	1.83	--	--	-0.455	4.07	44.5	1518	--	--
189.69	0.644	5.41	1.13	--	--	--	--	-0.531	--	--	--	--	--
192.57	0.649	5.44	--	0.728	--	--	--	-0.672	2.84	--	--	--	--
159.12	0.589	5.38	--	--	2.05	--	--	-0.424	--	67.21	87	--	--
223.22	0.697	5.44	--	--	--	--	--	-0.656	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	83.63	temperature	25	4320	< th	dose dependent	rect.	13	13
5	83.75	temperature	25	4320	< th	dose dependent	rect.	15	10
9	83.78	temperature	25	4320	< th	dose dependent	rect.	17	7
18	83.89	temperature	25	4320	< th	dose dependent	sin	16	NA
39	84.09	temperature	10	4320	> th	dose dependent	rect.	22	1
41	84.10	temperature	30	4320	< th	dose dependent	rect.	22	1
152	85.07	temperature	25	4320	< th	dose dependent	no	NA	NA
157	85.09	temperature	25	4320	< th	dose dependent	rect.	17	23
172	85.16	temperature	25	4320	< th	dose dependent	rect.	15	23
180	85.18	temperature	25	4320	< th	dose dependent	rect.	21	23
221	85.40	temperature	15	270	> th	dose dependent	rect.	18	23
372	86.31	temperature	15	270	> th	dose dependent	rect.	16	23
391	86.41	temperature	30	720	< th	dose dependent	rect.	20	18
433	86.60	temperature	10	4320	> th	dose dependent	sin	15	NA
509	86.87	temperature	15	1440	> th	dose dependent	rect.	21	15
530	86.94	temperature	25	4320	< th	dose dependent	sin	2	NA
544	86.95	temperature	10	4320	> th	dose dependent	rect.	10	17
631	87.15	temperature	30	270	< th	dose dependent	rect.	23	23
691	87.29	temperature	15	90	> th	dose dependent	rect.	7	23
692	87.30	temperature	20	4320	< th	dose independent	rect.	17	7
699	87.31	temperature	20	4320	> th	dose independent	rect.	17	7
772	87.43	temperature	20	4320	> th	dose independent	rect.	13	13
791	87.45	temperature	10	4320	> th	dose dependent	rect.	16	20
978	87.67	temperature	10	4320	> th	dose dependent	no	NA	NA
986	87.68	temperature	30	1440	< th	dose dependent	rect.	3	8