Os10g0370100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os10g0370100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.49 | 0.218 | 9.17 | 0.91 | 0.65 | 0.676 | 0.051 | 1.73 | 0.395 | 19.6 | 20.5 | 1441 | -- | -- |
| 26.79 | 0.241 | 9.2 | 0.728 | 0.605 | 0.357 | 0.0107 | -- | 0.394 | 19.7 | 21.4 | 1057 | -- | -- |
| 21.49 | 0.216 | 9.17 | 0.908 | 0.65 | 0.677 | -- | 1.73 | 0.395 | 19.6 | 20.51 | 1438 | -- | -- |
| 26.13 | 0.238 | 9.21 | 0.649 | 0.568 | 0.35 | -- | -- | 0.337 | 19.5 | 22 | 725 | -- | -- |
| 43.2 | 0.306 | 9.16 | 0.913 | -- | 0.612 | -- | 1.51 | 0.373 | -- | 21.3 | 2041 | -- | -- |
| 31.61 | 0.264 | 9.19 | 0.782 | 0.654 | -- | 0.0917 | -- | 0.431 | 19.7 | -- | -- | -- | -- |
| 31.63 | 0.263 | 9.19 | 0.78 | 0.654 | -- | -- | -- | 0.431 | 19.7 | -- | -- | -- | -- |
| 37.95 | 0.287 | 9.23 | 0.603 | -- | 0.578 | -- | -- | 0.189 | -- | 25.16 | 588 | -- | -- |
| 33.92 | 0.271 | 9.24 | -- | 0.648 | 0.57 | -- | -- | 0.221 | 19.7 | 20.92 | 7986 | -- | -- |
| 54.71 | 0.346 | 9.18 | 0.772 | -- | -- | -- | -- | 0.421 | -- | -- | -- | -- | -- |
| 47.67 | 0.323 | 9.21 | -- | 0.648 | -- | -- | -- | 0.344 | 19.8 | -- | -- | -- | -- |
| 47.16 | 0.32 | 9.25 | -- | -- | 0.662 | -- | -- | 0.104 | -- | 25.14 | 597 | -- | -- |
| 70.41 | 0.392 | 9.2 | -- | -- | -- | -- | -- | 0.336 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.47 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 19 |
| 37 | 22.22 | temperature | 25 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 41 | 22.25 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 8 |
| 46 | 22.27 | temperature | 25 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 47 | 22.28 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 64 | 22.34 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 71 | 22.38 | temperature | 20 | 1440 | > th | dose independent | rect. | 8 | 21 |
| 81 | 22.40 | temperature | 20 | 1440 | > th | dose independent | sin | 13 | NA |
| 86 | 22.41 | temperature | 20 | 1440 | > th | dose independent | rect. | 13 | 16 |
| 96 | 22.42 | temperature | 25 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 105 | 22.43 | temperature | 25 | 270 | < th | dose dependent | rect. | 17 | 23 |
| 109 | 22.44 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 19 |
| 111 | 22.45 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 8 |
| 125 | 22.46 | temperature | 25 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 144 | 22.49 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 7 |
| 173 | 22.52 | temperature | 25 | 720 | < th | dose dependent | sin | 22 | NA |
| 182 | 22.53 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 211 | 22.56 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 21 |
| 228 | 22.57 | temperature | 20 | 1440 | > th | dose independent | rect. | 19 | 17 |
| 233 | 22.57 | temperature | 20 | 1440 | < th | dose independent | rect. | 8 | 21 |
| 244 | 22.58 | temperature | 20 | 1440 | < th | dose independent | rect. | 13 | 16 |
| 249 | 22.58 | temperature | 20 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 258 | 22.59 | temperature | 20 | 1440 | < th | dose independent | sin | 13 | NA |
| 308 | 22.61 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 318 | 22.61 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 337 | 22.62 | temperature | 20 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 379 | 22.64 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 414 | 22.66 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 507 | 22.74 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 21 |
| 509 | 22.74 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 23 |
| 510 | 22.74 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 512 | 22.74 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 8 |
| 521 | 22.75 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 16 |
| 559 | 22.77 | temperature | 20 | 1440 | < th | dose independent | rect. | 14 | 22 |
| 564 | 22.77 | temperature | 25 | 1440 | < th | dose dependent | sin | 17 | NA |
| 599 | 22.80 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 628 | 22.81 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 675 | 22.83 | temperature | 25 | 1440 | < th | dose dependent | sin | 3 | NA |
| 709 | 22.86 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 23 |
| 805 | 22.94 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 898 | 23.02 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 23 |