Os09g0488700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0488700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.52 | 0.337 | 8.45 | 0.226 | 2.86 | 1.03 | -0.125 | -0.917 | 0.0363 | 6.71 | 27.04 | 12 | -- | -- |
| 52.68 | 0.341 | 8.46 | 0.0706 | 2.86 | 1.07 | -0.148 | -- | 9.04e-05 | 6.71 | 26.7 | 5 | -- | -- |
| 51.38 | 0.336 | 8.45 | 0.226 | 2.86 | 1.03 | -- | -0.944 | 0.035 | 6.72 | 27.23 | 6 | -- | -- |
| 52.74 | 0.34 | 8.46 | 0.0688 | 2.86 | 1.07 | -- | -- | 0.000978 | 6.72 | 26.7 | 5 | -- | -- |
| 347.92 | 0.869 | 8.44 | 0.823 | -- | 3.46 | -- | -1.31 | 0.362 | -- | 49.44 | 387 | -- | -- |
| 69.69 | 0.391 | 8.52 | -0.181 | 2.96 | -- | -0.218 | -- | -0.236 | 6.35 | -- | -- | -- | -- |
| 69.81 | 0.391 | 8.52 | -0.183 | 2.96 | -- | -- | -- | -0.235 | 6.35 | -- | -- | -- | -- |
| 349.1 | 0.87 | 8.47 | 0.613 | -- | 3.43 | -- | -- | 0.305 | -- | 65.39 | 389 | -- | -- |
| 52.85 | 0.34 | 8.47 | -- | 2.86 | 1.05 | -- | -- | -0.0118 | 6.71 | 26.7 | 5 | -- | -- |
| 525.73 | 1.07 | 8.57 | -0.106 | -- | -- | -- | -- | -0.172 | -- | -- | -- | -- | -- |
| 70.7 | 0.393 | 8.51 | -- | 2.96 | -- | -- | -- | -0.215 | 6.36 | -- | -- | -- | -- |
| 358.28 | 0.882 | 8.49 | -- | -- | 3.22 | -- | -- | 0.213 | -- | 80.42 | 388 | -- | -- |
| 526.02 | 1.07 | 8.57 | -- | -- | -- | -- | -- | -0.16 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.73 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 20 |
| 9 | 50.78 | temperature | 30 | 10 | < th | dose dependent | rect. | 10 | 22 |
| 16 | 51.20 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 20 |
| 20 | 51.46 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 18 |
| 21 | 51.50 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 16 |
| 27 | 51.62 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 40 | 51.77 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 20 |
| 50 | 51.94 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 19 |
| 66 | 52.17 | radiation | 1 | 720 | < th | dose dependent | rect. | 6 | 16 |
| 72 | 52.23 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 96 | 52.79 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 9 |
| 98 | 52.79 | temperature | 25 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 99 | 52.79 | temperature | 25 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 100 | 52.81 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 103 | 52.82 | temperature | 25 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 109 | 52.86 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 111 | 52.86 | temperature | 25 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 116 | 52.89 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 118 | 52.90 | temperature | 25 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 123 | 52.94 | temperature | 25 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 162 | 53.22 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 175 | 53.30 | radiation | 1 | 720 | < th | dose dependent | rect. | 1 | 22 |
| 202 | 53.56 | radiation | 1 | 720 | < th | dose independent | rect. | 6 | 16 |
| 212 | 53.63 | radiation | 1 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 214 | 53.65 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 10 |
| 268 | 54.12 | radiation | 1 | 720 | < th | dose dependent | rect. | 15 | 23 |
| 271 | 54.14 | radiation | 1 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 275 | 54.16 | temperature | 20 | 90 | > th | dose independent | rect. | 7 | 20 |
| 282 | 54.17 | radiation | 1 | 720 | < th | dose dependent | rect. | 17 | 23 |
| 285 | 54.21 | radiation | 1 | 270 | > th | dose independent | rect. | 15 | 23 |
| 303 | 54.30 | radiation | 1 | 720 | < th | dose dependent | no | NA | NA |
| 311 | 54.31 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 23 |
| 316 | 54.31 | radiation | 1 | 720 | < th | dose dependent | rect. | 12 | 23 |
| 351 | 54.45 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 21 |
| 364 | 54.51 | radiation | 1 | 720 | < th | dose independent | rect. | 1 | 22 |
| 398 | 54.67 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 22 |
| 402 | 54.69 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 13 |
| 409 | 54.73 | radiation | 1 | 720 | < th | dose dependent | sin | 23 | NA |
| 420 | 54.82 | radiation | 1 | 720 | > th | dose independent | rect. | 6 | 13 |
| 503 | 55.11 | radiation | 1 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 507 | 55.13 | temperature | 30 | 90 | < th | dose dependent | sin | 8 | NA |
| 512 | 55.14 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 12 |
| 523 | 55.17 | radiation | 1 | 720 | < th | dose independent | rect. | 19 | 23 |
| 527 | 55.19 | humidity | 60 | 90 | > th | dose dependent | rect. | 10 | 21 |
| 532 | 55.20 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 17 |
| 537 | 55.22 | radiation | 1 | 720 | < th | dose independent | rect. | 6 | 23 |
| 548 | 55.27 | radiation | 1 | 720 | > th | dose independent | sin | 0 | NA |
| 573 | 55.35 | temperature | 10 | 90 | > th | dose dependent | sin | 9 | NA |
| 609 | 55.48 | radiation | 1 | 720 | < th | dose independent | sin | 23 | NA |
| 623 | 55.49 | radiation | 1 | 720 | < th | dose independent | rect. | 15 | 23 |
| 629 | 55.52 | radiation | 1 | 720 | < th | dose independent | no | NA | NA |
| 634 | 55.53 | radiation | 1 | 720 | > th | dose independent | no | NA | NA |
| 683 | 55.54 | radiation | 1 | 720 | < th | dose independent | rect. | 12 | 23 |
| 710 | 55.63 | temperature | 15 | 30 | > th | dose dependent | rect. | 18 | 23 |
| 718 | 55.66 | radiation | 1 | 720 | < th | dose independent | rect. | 17 | 23 |
| 779 | 55.84 | temperature | 25 | 90 | < th | dose independent | rect. | 11 | 20 |
| 806 | 55.91 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 812 | 55.92 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 852 | 56.02 | temperature | 25 | 720 | < th | dose dependent | sin | 21 | NA |
| 885 | 56.09 | temperature | 15 | 270 | > th | dose dependent | rect. | 15 | 21 |
| 918 | 56.17 | temperature | 20 | 270 | > th | dose independent | rect. | 15 | 10 |
| 947 | 56.24 | temperature | 20 | 90 | > th | dose independent | rect. | 7 | 13 |
| 948 | 56.24 | temperature | 15 | 720 | > th | dose independent | rect. | 5 | 14 |
| 953 | 56.25 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 15 |