BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0463700 Os09g0463700|AK060708
(372 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0463700 Similar to AHM1 244 6e-65
Os08g0477700 Heat shock protein DnaJ, N-terminal domain con... 168 7e-42
Os03g0392400 Heat shock protein DnaJ, N-terminal domain con... 79 4e-15
Os07g0620200 Heat shock protein DnaJ, N-terminal domain con... 79 8e-15
Os10g0378450 75 8e-14
>Os09g0463700 Similar to AHM1
Length = 372
Score = 244 bits (624), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 122/136 (89%), Positives = 122/136 (89%)
Query: 1 MDPAAAARGQAEQWMRVAEKLLVARDLEGCKEFVSQALGTDPHVPGXXXXXXXXXXXXXX 60
MDPAAAARGQAEQWMRVAEKLLVARDLEGCKEFVSQALGTDPHVPG
Sbjct: 1 MDPAAAARGQAEQWMRVAEKLLVARDLEGCKEFVSQALGTDPHVPGANDLLAAADVLLAA 60
Query: 61 QRRRIPNGHPDPYAVLGLDPSTPASRRPDAIHAQYRRLSFLLNRSHPDRPCSLSFAEAAR 120
QRRRIPNGHPDPYAVLGLDPSTPASRRPDAIHAQYRRLSFLLNRSHPDRPCSLSFAEAAR
Sbjct: 61 QRRRIPNGHPDPYAVLGLDPSTPASRRPDAIHAQYRRLSFLLNRSHPDRPCSLSFAEAAR 120
Query: 121 LVADSWAFLSDPILKS 136
LVADSWAFLSDPILKS
Sbjct: 121 LVADSWAFLSDPILKS 136
Score = 180 bits (457), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 91/144 (63%), Positives = 91/144 (63%)
Query: 229 TFWTVCMSCCHIHQYDRLYEARKVLCPSCRQPFVAEEMAEPPPIVPGTDMYYCTWXXXXX 288
TFWTVCMSCCHIHQYDRLYEARKVLCPSCRQPFVAEEMAEPPPIVPGTDMYYCTW
Sbjct: 229 TFWTVCMSCCHIHQYDRLYEARKVLCPSCRQPFVAEEMAEPPPIVPGTDMYYCTWGFFPV 288
Query: 289 XXXXXXXXEKLISSQQHGTDQPNTPWLXXXXXXXXXXXXXXXXXXPVSAAVEVQSXXXXX 348
EKLISSQQHGTDQPNTPWL PVSAAVEVQS
Sbjct: 289 GFPGCPGFEKLISSQQHGTDQPNTPWLGTTGGAEADGVAGAENGAPVSAAVEVQSVPKPA 348
Query: 349 XXXXXXXXXXXXXXXXXSKNKKNL 372
SKNKKNL
Sbjct: 349 KPVRVKVGAKKRGRPKGSKNKKNL 372
>Os08g0477700 Heat shock protein DnaJ, N-terminal domain containing protein
Length = 396
Score = 168 bits (425), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 86/135 (63%), Positives = 101/135 (74%), Gaps = 1/135 (0%)
Query: 1 MDPAAAARGQAEQWMRVAEKLLVARDLEGCKEFVSQALGTDPHVPGXXXXXXXXXXXXXX 60
MDPAAA R +AE+W+ VAEKLL+ARDLEGCK+FVSQA DP VPG
Sbjct: 1 MDPAAARR-KAERWIGVAEKLLMARDLEGCKQFVSQARADDPTVPGADDLAAAADILLSA 59
Query: 61 QRRRIPNGHPDPYAVLGLDPSTPASRRPDAIHAQYRRLSFLLNRSHPDRPCSLSFAEAAR 120
QRRR+ G P+PYAVLGLD + PASR PD +H+ YRRLS LLNRSHPDRPC +FA+AAR
Sbjct: 60 QRRRLATGAPNPYAVLGLDCADPASRDPDVVHSAYRRLSLLLNRSHPDRPCLHAFADAAR 119
Query: 121 LVADSWAFLSDPILK 135
LVA++WAFL DP+ K
Sbjct: 120 LVAEAWAFLFDPVRK 134
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 40/55 (72%), Positives = 46/55 (83%)
Query: 229 TFWTVCMSCCHIHQYDRLYEARKVLCPSCRQPFVAEEMAEPPPIVPGTDMYYCTW 283
TFWT C SCC++H+Y R YEAR +LCPSCR+PF A MA PPPIVPGTDMYYC+W
Sbjct: 223 TFWTACPSCCNLHEYTRSYEARTLLCPSCRKPFFAAAMATPPPIVPGTDMYYCSW 277
>Os03g0392400 Heat shock protein DnaJ, N-terminal domain containing protein
Length = 405
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 69/129 (53%), Gaps = 13/129 (10%)
Query: 8 RGQAEQWMRVAEKLLVARDLEGCKEFVSQALGTDPHVPGXXXXXXXXXXXXXXQRRRIPN 67
R QAE+W+ +A KLL ARDL GCK F +A+ DP +PG Q +P+
Sbjct: 16 RVQAERWLEIAGKLLAARDLVGCKRFAERAVEADPLLPGADELLAVTDVLLASQ-SVLPS 74
Query: 68 GHPDPYAVLGLDPST-PASRRPDAIHAQYRRLSFLLNRS---HPDRPCSLSFAEAARLVA 123
G DP AVL L PST PA A+ YRRL+ LL + HP +LS LV
Sbjct: 75 GQADPLAVLQLPPSTNPADHA--AVSRAYRRLALLLRQDTNPHPGADVALS------LVH 126
Query: 124 DSWAFLSDP 132
D++A LSDP
Sbjct: 127 DAYAILSDP 135
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Query: 230 FWTVCMSCCHIHQYDRLYEARKVLCP--SCRQPFVAEEMAEPPPIVPGTDMYYCTW 283
FWT C C ++HQY R R + CP SCR+ FVA E++ PP IVPGT+MY+C W
Sbjct: 169 FWTACPFCSYVHQYQRELVGRALKCPNESCRKGFVAIEISTPPTIVPGTEMYHCAW 224
>Os07g0620200 Heat shock protein DnaJ, N-terminal domain containing protein
Length = 396
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 230 FWTVCMSCCHIHQYDRLYEARKVLCPS--CRQPFVAEEMAEPPPIVPGTDMYYCTW 283
FWT C CCH++QY R R + CP CR+ FVA E+ PPIVPGTDMYYC W
Sbjct: 151 FWTACPYCCHVYQYQRALMGRALRCPGAGCRRAFVATEIPAAPPIVPGTDMYYCAW 206
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 67/128 (52%), Gaps = 10/128 (7%)
Query: 4 AAAARGQAEQWMRVAEKLLVARDLEGCKEFVSQALGTDPHVPGXXXXXXXXXXXXXXQRR 63
RG +W+ +A KLL ARDL GCK +A+ +P +PG Q R
Sbjct: 5 GGGGRGDPARWLEIAGKLLAARDLVGCKRLAERAVDAEPLLPGADELLAVADVLLASQ-R 63
Query: 64 RIPNGHPDPYAVLGLDPSTPASRRPDAIHAQYRRLSFLLNRSHPDRPCSLSFAEAARLVA 123
+P+G PDP AVL L P+ P + YRRLS LL+ S+P RP + + A R V
Sbjct: 64 LLPSGRPDPIAVLHLQPNP----DPAEVKRSYRRLSNLLS-SNP-RPGADA---ALRCVQ 114
Query: 124 DSWAFLSD 131
+++A LSD
Sbjct: 115 EAFAHLSD 122
>Os10g0378450
Length = 195
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 39/56 (69%), Gaps = 2/56 (3%)
Query: 230 FWTVCMSCCHIHQYDRLYEARKVLCPS--CRQPFVAEEMAEPPPIVPGTDMYYCTW 283
FWT C CC++H Y R Y R++ CP+ CR+ F A E+ PPIVPGTDMY+CTW
Sbjct: 15 FWTACPHCCYVHSYPRHYAGRRLRCPTAACRRAFSAAELPAAPPIVPGTDMYFCTW 70
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.133 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,322,936
Number of extensions: 282589
Number of successful extensions: 784
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 781
Number of HSP's successfully gapped: 9
Length of query: 372
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 270
Effective length of database: 11,709,973
Effective search space: 3161692710
Effective search space used: 3161692710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)