Os07g0620200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Heat shock protein DnaJ, N-terminal domain containing protein.
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Os07g0620200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Heat shock protein DnaJ, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44.99 | 0.315 | 8.41 | 0.887 | 0.806 | 0.507 | 0.327 | 1.37 | -0.389 | 12.7 | 78 | 6318 | -- | -- |
| 47.35 | 0.32 | 8.42 | 0.897 | 0.789 | 0.588 | 0.326 | -- | -0.458 | 12.7 | 81.99 | 7609 | -- | -- |
| 45.41 | 0.314 | 8.41 | 0.91 | 0.799 | 0.511 | -- | 1.38 | -0.4 | 12.7 | 79.99 | 6258 | -- | -- |
| 47.72 | 0.322 | 8.43 | 0.923 | 0.781 | 0.559 | -- | -- | -0.482 | 12.8 | 94 | 7471 | -- | -- |
| 61.78 | 0.368 | 8.41 | 0.81 | -- | 1.02 | -- | 0.546 | -0.35 | -- | 88 | 6080 | -- | -- |
| 52.24 | 0.339 | 8.4 | 0.837 | 0.797 | -- | 0.29 | -- | -0.362 | 12.9 | -- | -- | -- | -- |
| 52.59 | 0.34 | 8.4 | 0.847 | 0.797 | -- | -- | -- | -0.361 | 12.9 | -- | -- | -- | -- |
| 62.03 | 0.368 | 8.41 | 0.822 | -- | 1.03 | -- | -- | -0.371 | -- | 92 | 7461 | -- | -- |
| 68.68 | 0.388 | 8.42 | -- | 0.561 | 0.483 | -- | -- | -0.462 | 12.2 | 94 | 7471 | -- | -- |
| 92.15 | 0.449 | 8.41 | 0.818 | -- | -- | -- | -- | -0.376 | -- | -- | -- | -- | -- |
| 71.5 | 0.396 | 8.42 | -- | 0.783 | -- | -- | -- | -0.455 | 12.8 | -- | -- | -- | -- |
| 79.86 | 0.418 | 8.43 | -- | -- | 1.03 | -- | -- | -0.462 | -- | 92 | 7461 | -- | -- |
| 109.79 | 0.489 | 8.43 | -- | -- | -- | -- | -- | -0.466 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 44.44 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 2 | 44.71 | humidity | 60.0 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 5 | 44.83 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 7 | 6 |
| 11 | 45.09 | humidity | 50.0 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 12 | 45.12 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 11 | 1 |
| 28 | 45.25 | humidity | 60.0 | 4320 | < th | dose independent | rect. | 19 | 21 |
| 75 | 45.31 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 19 | 21 |
| 76 | 45.32 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 9 | 7 |
| 77 | 45.32 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 4 | 12 |
| 131 | 45.41 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 13 | 22 |
| 143 | 45.43 | humidity | 70.0 | 4320 | < th | dose dependent | rect. | 10 | 6 |
| 185 | 45.46 | humidity | 60.0 | 4320 | < th | dose independent | sin | 3 | NA |
| 189 | 45.47 | humidity | 60.0 | 4320 | > th | dose independent | sin | 4 | NA |
| 254 | 45.56 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 257 | 45.56 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 6 | 2 |
| 275 | 45.58 | wind | 1.0 | 14400 | < th | dose independent | rect. | 1 | 2 |
| 282 | 45.61 | humidity | 70.0 | 4320 | < th | dose dependent | rect. | 15 | 1 |
| 299 | 45.65 | humidity | 70.0 | 4320 | < th | dose dependent | sin | 2 | NA |
| 321 | 45.68 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 16 | 19 |
| 396 | 45.72 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 16 | 19 |
| 446 | 45.77 | temperature | 30.0 | 270 | < th | dose independent | rect. | 8 | 11 |
| 478 | 45.78 | humidity | 60.0 | 4320 | < th | dose independent | no | NA | NA |
| 575 | 45.79 | humidity | 90.0 | 4320 | > th | dose independent | rect. | 7 | 7 |
| 598 | 45.81 | humidity | 60.0 | 4320 | > th | dose independent | no | NA | NA |
| 643 | 45.81 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 9 | 20 |
| 706 | 45.82 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 14 | 23 |
| 735 | 45.82 | humidity | 70.0 | 4320 | < th | dose dependent | rect. | 10 | 23 |
| 749 | 45.83 | humidity | 70.0 | 4320 | < th | dose dependent | no | NA | NA |
| 832 | 45.83 | humidity | 70.0 | 4320 | < th | dose dependent | rect. | 13 | 23 |
| 839 | 45.84 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 903 | 45.86 | humidity | 60.0 | 4320 | < th | dose independent | rect. | 14 | 23 |
| 933 | 45.89 | humidity | 70.0 | 4320 | > th | dose independent | sin | 10 | NA |
| 959 | 45.90 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 5 | 4 |
| 963 | 45.90 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 5 | 4 |