Os03g0392400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Heat shock protein DnaJ, N-terminal domain containing protein.
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Os03g0392400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Heat shock protein DnaJ, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.59 | 0.218 | 10.8 | 0.915 | 0.377 | 0.571 | 0.372 | 0.409 | 0.0351 | 10.6 | 24.1 | 91 | -- | -- |
| 21.83 | 0.218 | 10.8 | 0.978 | 0.37 | 0.521 | 0.309 | -- | 0.0438 | 10.4 | 24.11 | 104 | -- | -- |
| 22.07 | 0.219 | 10.8 | 0.953 | 0.369 | 0.536 | -- | 0.208 | 0.0356 | 10.4 | 24.1 | 106 | -- | -- |
| 22.13 | 0.219 | 10.8 | 0.98 | 0.368 | 0.517 | -- | -- | 0.0448 | 10.4 | 24.13 | 104 | -- | -- |
| 25.35 | 0.234 | 10.8 | 0.982 | -- | 0.645 | -- | 0.215 | 0.0495 | -- | 35.69 | 766 | -- | -- |
| 25.56 | 0.237 | 10.8 | 0.848 | 0.323 | -- | 0.256 | -- | -0.0401 | 9.85 | -- | -- | -- | -- |
| 25.8 | 0.238 | 10.8 | 0.857 | 0.323 | -- | -- | -- | -0.0399 | 9.71 | -- | -- | -- | -- |
| 25.38 | 0.235 | 10.8 | 1.02 | -- | 0.648 | -- | -- | 0.06 | -- | 49.67 | 759 | -- | -- |
| 44.94 | 0.314 | 10.9 | -- | 0.335 | 0.124 | -- | -- | -0.118 | 9.69 | 24.09 | 58 | -- | -- |
| 32.01 | 0.264 | 10.8 | 0.854 | -- | -- | -- | -- | -0.0394 | -- | -- | -- | -- | -- |
| 45.18 | 0.314 | 10.9 | -- | 0.322 | -- | -- | -- | -0.135 | 9.51 | -- | -- | -- | -- |
| 50.08 | 0.33 | 10.9 | -- | -- | 0.263 | -- | -- | -0.102 | -- | 66.83 | 672 | -- | -- |
| 51.27 | 0.334 | 10.9 | -- | -- | -- | -- | -- | -0.134 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.81 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 9 |
| 3 | 19.92 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 4 |
| 12 | 20.09 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 11 |
| 13 | 20.12 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 4 |
| 61 | 20.44 | temperature | 25 | 720 | < th | dose independent | rect. | 18 | 4 |
| 66 | 20.45 | temperature | 10 | 270 | > th | dose dependent | sin | 12 | NA |
| 74 | 20.47 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 11 |
| 88 | 20.56 | temperature | 25 | 720 | < th | dose independent | rect. | 19 | 2 |
| 90 | 20.56 | temperature | 30 | 270 | < th | dose dependent | sin | 12 | NA |
| 92 | 20.57 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 1 |
| 128 | 20.69 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 4 |
| 205 | 20.86 | temperature | 10 | 720 | > th | dose dependent | sin | 16 | NA |
| 285 | 20.96 | radiation | 20 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 296 | 20.98 | temperature | 30 | 720 | < th | dose dependent | sin | 16 | NA |
| 319 | 21.01 | radiation | 40 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 330 | 21.02 | radiation | 1 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 356 | 21.06 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 391 | 21.10 | radiation | 20 | 1440 | < th | dose dependent | rect. | 16 | 9 |
| 403 | 21.11 | radiation | 40 | 1440 | < th | dose dependent | rect. | 16 | 3 |
| 409 | 21.12 | radiation | 10 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 427 | 21.12 | radiation | 40 | 1440 | < th | dose dependent | rect. | 16 | 9 |
| 543 | 21.22 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 9 |
| 559 | 21.23 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 14 |
| 591 | 21.24 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 19 |
| 655 | 21.30 | temperature | 20 | 90 | > th | dose independent | rect. | 16 | 13 |
| 821 | 21.45 | temperature | 25 | 720 | < th | dose independent | sin | 17 | NA |