Os09g0463700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to AHM1.
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Os09g0463700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to AHM1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16.28 | 0.19 | 10.2 | 1.41 | 0.0141 | 0.177 | -0.615 | 1.1 | 0.462 | 19.9 | 21.1 | 1545 | -- | -- |
| 18.63 | 0.201 | 10.2 | 1.16 | 0.0118 | 0.096 | 0.692 | -- | 0.404 | 7.58 | 24.8 | 2462 | -- | -- |
| 17.31 | 0.194 | 10.2 | 1.45 | 0.0551 | 0.183 | -- | 1.16 | 0.448 | 22 | 21 | 1528 | -- | -- |
| 19.23 | 0.206 | 10.2 | 1.17 | 0.104 | 0.0949 | -- | -- | 0.399 | 1.14 | 21.75 | 1247 | -- | -- |
| 17.3 | 0.194 | 10.2 | 1.46 | -- | 0.138 | -- | 1.08 | 0.471 | -- | 21.6 | 1499 | -- | -- |
| 18.92 | 0.204 | 10.2 | 1.19 | 0.0175 | -- | -0.607 | -- | 0.426 | 20 | -- | -- | -- | -- |
| 19.71 | 0.208 | 10.2 | 1.2 | 0.0714 | -- | -- | -- | 0.424 | 1.35 | -- | -- | -- | -- |
| 19.66 | 0.206 | 10.2 | 1.17 | -- | 0.106 | -- | -- | 0.398 | -- | 24.9 | 2469 | -- | -- |
| 28.39 | 0.248 | 10.3 | -- | 0.0531 | 0.808 | -- | -- | 0.0266 | 2.97 | 21 | 47520 | -- | -- |
| 20.02 | 0.209 | 10.2 | 1.2 | -- | -- | -- | -- | 0.426 | -- | -- | -- | -- | -- |
| 57.76 | 0.356 | 10.2 | -- | 0.093 | -- | -- | -- | 0.29 | 1.81 | -- | -- | -- | -- |
| 28.56 | 0.249 | 10.3 | -- | -- | 0.811 | -- | -- | 0.0262 | -- | 21 | 47520 | -- | -- |
| 58.28 | 0.356 | 10.2 | -- | -- | -- | -- | -- | 0.292 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.21 | humidity | 90 | 1440 | > th | dose dependent | rect. | 19 | 2 |
| 2 | 16.23 | humidity | 90 | 1440 | > th | dose independent | rect. | 18 | 7 |
| 11 | 16.32 | humidity | 70 | 1440 | > th | dose dependent | rect. | 10 | 20 |
| 12 | 16.33 | humidity | 90 | 1440 | > th | dose dependent | rect. | 17 | 7 |
| 22 | 16.36 | humidity | 90 | 1440 | < th | dose independent | rect. | 19 | 2 |
| 24 | 16.37 | humidity | 90 | 1440 | > th | dose independent | rect. | 19 | 2 |
| 37 | 16.40 | humidity | 70 | 1440 | > th | dose dependent | rect. | 14 | 16 |
| 49 | 16.42 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 22 |
| 57 | 16.43 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 67 | 16.44 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 22 |
| 73 | 16.45 | humidity | 90 | 1440 | > th | dose independent | sin | 16 | NA |
| 75 | 16.45 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 19 |
| 94 | 16.47 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 11 |
| 96 | 16.47 | temperature | 20 | 1440 | > th | dose independent | rect. | 14 | 16 |
| 98 | 16.47 | humidity | 80 | 1440 | < th | dose independent | rect. | 22 | 22 |
| 107 | 16.48 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 10 |
| 111 | 16.48 | temperature | 20 | 1440 | < th | dose independent | rect. | 13 | 17 |
| 121 | 16.48 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 10 |
| 141 | 16.49 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 20 |
| 197 | 16.51 | humidity | 80 | 1440 | > th | dose independent | rect. | 23 | 22 |
| 205 | 16.51 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 14 |
| 221 | 16.52 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 20 |
| 271 | 16.53 | temperature | 25 | 1440 | < th | dose dependent | sin | 15 | NA |
| 273 | 16.53 | humidity | 70 | 1440 | > th | dose dependent | sin | 16 | NA |
| 309 | 16.54 | humidity | 90 | 1440 | > th | dose dependent | sin | 18 | NA |
| 323 | 16.54 | humidity | 50 | 720 | > th | dose dependent | rect. | 18 | 14 |
| 335 | 16.55 | temperature | 20 | 1440 | > th | dose independent | sin | 15 | NA |
| 337 | 16.55 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 343 | 16.55 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 9 | 5 |
| 367 | 16.55 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 385 | 16.55 | humidity | 70 | 1440 | > th | dose dependent | rect. | 23 | 22 |
| 386 | 16.56 | temperature | 20 | 1440 | < th | dose independent | sin | 15 | NA |
| 389 | 16.56 | humidity | 80 | 1440 | > th | dose independent | sin | 20 | NA |
| 390 | 16.56 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 392 | 16.56 | humidity | 80 | 1440 | < th | dose independent | rect. | 14 | 6 |
| 393 | 16.56 | humidity | 80 | 1440 | > th | dose independent | rect. | 14 | 7 |
| 420 | 16.56 | temperature | 20 | 1440 | > th | dose dependent | sin | 14 | NA |
| 436 | 16.56 | humidity | 90 | 720 | > th | dose dependent | rect. | 4 | 21 |
| 441 | 16.57 | humidity | 80 | 1440 | < th | dose independent | sin | 19 | NA |
| 443 | 16.57 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 444 | 16.57 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 448 | 16.57 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 9 | 6 |
| 485 | 16.57 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 517 | 16.58 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 520 | 16.58 | humidity | 80 | 1440 | < th | dose independent | no | NA | NA |
| 549 | 16.58 | humidity | 80 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 552 | 16.58 | humidity | 80 | 1440 | < th | dose independent | rect. | 14 | 23 |
| 574 | 16.59 | humidity | 80 | 1440 | > th | dose independent | rect. | 15 | 5 |
| 583 | 16.59 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 3 | 11 |
| 613 | 16.59 | humidity | 80 | 1440 | < th | dose independent | rect. | 3 | 23 |
| 617 | 16.59 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 2 |
| 620 | 16.59 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 6 |
| 623 | 16.59 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 9 |
| 690 | 16.60 | humidity | 80 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 695 | 16.60 | humidity | 70 | 1440 | > th | dose dependent | no | NA | NA |
| 698 | 16.60 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 4 |
| 760 | 16.61 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 763 | 16.61 | humidity | 80 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 800 | 16.61 | humidity | 70 | 1440 | > th | dose dependent | rect. | 14 | 23 |
| 803 | 16.62 | humidity | 80 | 1440 | > th | dose independent | no | NA | NA |
| 805 | 16.62 | atmosphere | 1005 | 14400 | < th | dose independent | sin | 1 | NA |
| 858 | 16.62 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 22 |
| 862 | 16.62 | humidity | 80 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 865 | 16.62 | humidity | 80 | 1440 | > th | dose independent | rect. | 14 | 23 |
| 869 | 16.62 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 885 | 16.62 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 10 |
| 908 | 16.63 | atmosphere | 1005 | 14400 | > th | dose independent | sin | 2 | NA |
| 972 | 16.63 | humidity | 80 | 1440 | < th | dose independent | rect. | 16 | 23 |