BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0463700 Os09g0463700|AK060708
(372 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G01710.1 | chr2:315836-316771 FORWARD LENGTH=312 71 8e-13
AT5G64360.3 | chr5:25737208-25738602 REVERSE LENGTH=465 65 9e-11
AT5G53150.1 | chr5:21554935-21557202 FORWARD LENGTH=727 58 8e-09
AT5G09540.1 | chr5:2962422-2963264 REVERSE LENGTH=281 57 1e-08
AT2G05230.1 | chr2:1899818-1901938 REVERSE LENGTH=707 55 5e-08
AT2G05250.1 | chr2:1913645-1915765 REVERSE LENGTH=707 55 5e-08
AT4G19580.1 | chr4:10668367-10669452 FORWARD LENGTH=313 54 1e-07
AT1G62970.1 | chr1:23323358-23325751 FORWARD LENGTH=798 50 2e-06
AT2G25560.1 | chr2:10881790-10883760 FORWARD LENGTH=657 50 2e-06
>AT2G01710.1 | chr2:315836-316771 FORWARD LENGTH=312
Length = 311
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 67/131 (51%), Gaps = 7/131 (5%)
Query: 8 RGQAEQWMRVAEKLLVARDLEGCKEFVSQALGTDPHVPGXXXXXXXXXXXXXXQ-RRRIP 66
R +AE+ + +AEKLL +RDL G KEF A T+P + G RI
Sbjct: 8 RSEAERLLGIAEKLLESRDLNGSKEFAILAQETEPLLEGTDQILAVVDVLLSSAPENRIK 67
Query: 67 NGHPDPYAVLGLDPSTPASRRPDAIHAQYRRLSFLLNRSHPDRPCSLSFAEAA-RLVADS 125
N P+ Y +L ++ T +S D I QYRRL+ LL HPD+ FA+ A R V D+
Sbjct: 68 N-QPNWYKILQIEDLTESSTDNDLIKKQYRRLALLL---HPDK-NRFPFADQAFRFVLDA 122
Query: 126 WAFLSDPILKS 136
W LS P KS
Sbjct: 123 WEVLSTPTKKS 133
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%)
Query: 229 TFWTVCMSCCHIHQYDRLYEARKVLCPSCRQPFVAEEMAEPPPIVPGTDMYYCTWXXXXX 288
TFWT C C +H+Y R+Y+ + C +C++ F A + + PP++PG D YYC W
Sbjct: 165 TFWTACPYCYSLHEYPRVYQEYCIRCQNCQRAFHAASIPQLPPLIPGKDEYYCCWGFFPM 224
Query: 289 XXXXXXXXEKLISSQQHGTDQPN 311
E I++ PN
Sbjct: 225 GFVGGKGGEAAIANGVDAAKFPN 247
>AT5G64360.3 | chr5:25737208-25738602 REVERSE LENGTH=465
Length = 464
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 66/129 (51%), Gaps = 9/129 (6%)
Query: 10 QAEQWMRVAEKLLVARDLEGCKEFVSQALGTDPHVPGXXXXXXXXXXXXXXQRRRIPNGH 69
+A+QW+ +EKLL + DL+G K F +A DP R+ + +
Sbjct: 17 EADQWLVTSEKLLASSDLQGAKTFAIRACEADPTRAEAADYILAICDILLAGETRLGDSN 76
Query: 70 -PDPYAVLGLDPSTPASRRPDAIHAQYRRLSFLLNRSHPDRPCSLSFAE-AARLVADSWA 127
PD YAVL L ++ P+ + QYRRL+ LLN S P FA+ A ++V+D+W
Sbjct: 77 LPDWYAVLRL---GRLAQNPEHVATQYRRLALLLNPSVNRLP----FADRALKIVSDAWF 129
Query: 128 FLSDPILKS 136
LSDP KS
Sbjct: 130 VLSDPFKKS 138
>AT5G53150.1 | chr5:21554935-21557202 FORWARD LENGTH=727
Length = 726
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 59/124 (47%), Gaps = 9/124 (7%)
Query: 8 RGQAEQWMRVAEKLLVARDLEGCKEFVSQALGTDPHVPGXXXXXXXXXXXXXXQRRRIPN 67
+ +A++ M +AE+ + +D G K+F ++A P + G ++
Sbjct: 5 KDEAKRAMDIAERKMTEKDYTGAKKFANKAQNLFPELDGLKQLFVAINVYISGEKTFA-- 62
Query: 68 GHPDPYAVLGLDPSTPASRRPDAIHAQYRRLSFLLNRSHPDRPCSLSFAEAARLVADSWA 127
G D Y VLG+DP +A+ QYR+L +L HPD+ A LVA++WA
Sbjct: 63 GEADWYGVLGVDPFAS----DEALKKQYRKLVLML---HPDKNKCKGAEGAFNLVAEAWA 115
Query: 128 FLSD 131
LSD
Sbjct: 116 LLSD 119
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 229 TFWTVCMSCCHIHQYDRLYEARKVLCPSCRQPFVAEEMAEPPPIVP 274
TFWT+C C ++Y R+Y + +LCP C FVAEE PP +P
Sbjct: 203 TFWTMCNKCDTQYEYQRVYLNQTLLCPHCHHGFVAEEKT-PPTNIP 247
>AT5G09540.1 | chr5:2962422-2963264 REVERSE LENGTH=281
Length = 280
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 61/131 (46%), Gaps = 9/131 (6%)
Query: 8 RGQAEQWMRVAEKLLVARDLEGCKEFVSQALGTDPHVPGXXXXXXXXXXXXXXQRRRIPN 67
R +A+Q + +EKLL + D G K F +A DP I +
Sbjct: 11 RAEADQLLATSEKLLASSDFHGAKTFAIRACEADPSRTDAADYILAIADTLLAGETTIGD 70
Query: 68 GH-PDPYAVLGLDPSTPASRRPDAIHAQYRRLSFLLNRSHPDRPCSLSFAEAA-RLVADS 125
PD YAVL + T + P+ + QYRRL+ LL + P FA+ A +LV+D+
Sbjct: 71 SKVPDWYAVLRISRLT---QSPEHVATQYRRLTLLLKLNINRLP----FADQALKLVSDA 123
Query: 126 WAFLSDPILKS 136
W LSDP KS
Sbjct: 124 WYVLSDPPRKS 134
>AT2G05230.1 | chr2:1899818-1901938 REVERSE LENGTH=707
Length = 706
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 9/131 (6%)
Query: 6 AARGQAEQWMRVAEKLLVARDLEGCKEFVSQALGTDPHVPGXXXXXXXXXXXXXXQRRRI 65
A R +A + ++AE+ +D + + +A P + G Q R
Sbjct: 3 AYREEALRVKQIAERRFAEKDFTSARSYALKAKSLFPDLEGLSQMVATFEVYLASQTR-- 60
Query: 66 PNGHPDPYAVLGLDPSTPASRRPDAIHAQYRRLSFLLNRSHPDRPCSLSFAEAARLVADS 125
G D YAVLGL PS A +R + QY++++ LL HPD+ + A L++++
Sbjct: 61 SGGQIDYYAVLGLKPS--AGKR--EVKKQYKKMAVLL---HPDKNKCIGADGAFHLISEA 113
Query: 126 WAFLSDPILKS 136
W+FLS+ KS
Sbjct: 114 WSFLSNEFNKS 124
>AT2G05250.1 | chr2:1913645-1915765 REVERSE LENGTH=707
Length = 706
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 9/131 (6%)
Query: 6 AARGQAEQWMRVAEKLLVARDLEGCKEFVSQALGTDPHVPGXXXXXXXXXXXXXXQRRRI 65
A R +A + ++AE+ +D + + +A P + G Q R
Sbjct: 3 AYREEALRVKQIAERRFAEKDFTSARSYALKAKSLFPDLEGLSQMVATFEVYLASQTR-- 60
Query: 66 PNGHPDPYAVLGLDPSTPASRRPDAIHAQYRRLSFLLNRSHPDRPCSLSFAEAARLVADS 125
G D YAVLGL PS A +R + QY++++ LL HPD+ + A L++++
Sbjct: 61 SGGQIDYYAVLGLKPS--AGKR--EVKKQYKKMAVLL---HPDKNKCIGADGAFHLISEA 113
Query: 126 WAFLSDPILKS 136
W+FLS+ KS
Sbjct: 114 WSFLSNEFNKS 124
>AT4G19580.1 | chr4:10668367-10669452 FORWARD LENGTH=313
Length = 312
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 9/124 (7%)
Query: 8 RGQAEQWMRVAEKLLVARDLEGCKEFVSQALGTDPHVPGXXXXXXXXXXXXXXQRRRIPN 67
+ +A++ M +AEK L D +G K F+S+A P + G + N
Sbjct: 5 KEEAKKAMDIAEKKLSKNDYDGAKTFISKAQALYPKLDGLEQVVMMIDVYISASNK--IN 62
Query: 68 GHPDPYAVLGLDPSTPASRRPDAIHAQYRRLSFLLNRSHPDRPCSLSFAEAARLVADSWA 127
G D Y +LG+DP +A+ QY++L+ LL HPD+ A +LV +
Sbjct: 63 GEADWYGILGIDPLADE----EAVKKQYKKLALLL---HPDKNRFNGAEGAFKLVRHARD 115
Query: 128 FLSD 131
LSD
Sbjct: 116 LLSD 119
>AT1G62970.1 | chr1:23323358-23325751 FORWARD LENGTH=798
Length = 797
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 60/129 (46%), Gaps = 9/129 (6%)
Query: 11 AEQWMRVAEKLLVARDLEGCKEFVSQALGTDPHVPGXXXXXXXXXXXXXXQRRRI---PN 67
AE+ + AEKLL++ DL G K + +A D + RI +
Sbjct: 18 AERMLAQAEKLLLSGDLNGSKTYAIRACEADHSLVDHAELILAVADTLVAGESRIRGTTS 77
Query: 68 GHPDPYAVLGLDPSTPASRRPDAIHAQYRRLSFLLNRSHPDRPCSLSFAEAARLVADSWA 127
PD YAVL L + P+ + QY RL+ LLN S P S +A RL++D+W
Sbjct: 78 DLPDWYAVLRL---VRLTHNPELVATQYSRLAVLLNPSRNRYPYS---EQAFRLISDAWY 131
Query: 128 FLSDPILKS 136
LSDP K+
Sbjct: 132 VLSDPSRKT 140
>AT2G25560.1 | chr2:10881790-10883760 FORWARD LENGTH=657
Length = 656
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 229 TFWTVCMSCCHIHQYDRLYEARKVLCPSCRQPFVAEEMAEPP 270
TFWTVC +C ++Y +Y + +LCP+CR+PF+A E +PP
Sbjct: 194 TFWTVCRTCRTQYEYHSVYLNQNLLCPNCRKPFIAVE-TDPP 234
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.133 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,870,207
Number of extensions: 148765
Number of successful extensions: 392
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 386
Number of HSP's successfully gapped: 12
Length of query: 372
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 272
Effective length of database: 8,364,969
Effective search space: 2275271568
Effective search space used: 2275271568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)