BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0456100 Os09g0456100|AK072474
(620 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0456100 Remorin, C-terminal region domain containing p... 1053 0.0
Os08g0471800 Remorin, C-terminal region domain containing p... 506 e-143
Os02g0767000 Remorin, C-terminal region domain containing p... 258 1e-68
Os03g0120200 Remorin, C-terminal region domain containing p... 66 7e-11
>Os09g0456100 Remorin, C-terminal region domain containing protein
Length = 620
Score = 1053 bits (2724), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 526/620 (84%), Positives = 526/620 (84%)
Query: 1 MERMRCVGGGDTPLGFRGXXXXXXXXXXXXXSASGRPMXXXXXXXXXWGEXXXXXXXXXX 60
MERMRCVGGGDTPLGFRG SASGRPM WGE
Sbjct: 1 MERMRCVGGGDTPLGFRGVVEEELEEEVAAVSASGRPMQRQRRRRRRWGEDADDGYSASS 60
Query: 61 XXXXXXXXXXXXXXXXPLAGFVRADGDPDTDLETDGVATPSSNASAAFAEPHDEEEGDEV 120
PLAGFVRADGDPDTDLETDGVATPSSNASAAFAEPHDEEEGDEV
Sbjct: 61 TGGGGSSGCGSFGCDSPLAGFVRADGDPDTDLETDGVATPSSNASAAFAEPHDEEEGDEV 120
Query: 121 LCGVVEGDWAQLQEPTKSPADRTTGECLYQRRRSEAVLLQGRKGLKQRPASLDFGSGSPG 180
LCGVVEGDWAQLQEPTKSPADRTTGECLYQRRRSEAVLLQGRKGLKQRPASLDFGSGSPG
Sbjct: 121 LCGVVEGDWAQLQEPTKSPADRTTGECLYQRRRSEAVLLQGRKGLKQRPASLDFGSGSPG 180
Query: 181 FNGAPLSPGFVVGGVGLMNKGLVSSSFIRSDVFPSPRTPNYRRHRSSVFGYQKGWSSERV 240
FNGAPLSPGFVVGGVGLMNKGLVSSSFIRSDVFPSPRTPNYRRHRSSVFGYQKGWSSERV
Sbjct: 181 FNGAPLSPGFVVGGVGLMNKGLVSSSFIRSDVFPSPRTPNYRRHRSSVFGYQKGWSSERV 240
Query: 241 PLASKGNRRYPGSSMAFPFSNGRTLPSKWEDAERWIFSPNSSDVLEKTSFAPARRXXXXX 300
PLASKGNRRYPGSSMAFPFSNGRTLPSKWEDAERWIFSPNSSDVLEKTSFAPARR
Sbjct: 241 PLASKGNRRYPGSSMAFPFSNGRTLPSKWEDAERWIFSPNSSDVLEKTSFAPARRPKSKS 300
Query: 301 XXXXXXXXXXXQYSSVSLLDNGRVGHLTANSPFLAGVLIPEHYCGEKDNIGRYMSRTAGE 360
QYSSVSLLDNGRVGHLTANSPFLAGVLIPEHYCGEKDNIGRYMSRTAGE
Sbjct: 301 GPLGPPGKFGGQYSSVSLLDNGRVGHLTANSPFLAGVLIPEHYCGEKDNIGRYMSRTAGE 360
Query: 361 EASIGIGGKSCLANGGSHATQYNRVRRRLDTAIESSPSLPSTQASVQDEQVGITEESASI 420
EASIGIGGKSCLANGGSHATQYNRVRRRLDTAIESSPSLPSTQASVQDEQVGITEESASI
Sbjct: 361 EASIGIGGKSCLANGGSHATQYNRVRRRLDTAIESSPSLPSTQASVQDEQVGITEESASI 420
Query: 421 ITPIILRKDAAXXXXXXXXXXXXXXXXXXFIHLLTTHQVREKENCFSDVIRDVHMDDRVT 480
ITPIILRKDAA FIHLLTTHQVREKENCFSDVIRDVHMDDRVT
Sbjct: 421 ITPIILRKDAATQTSPNLSRSSSPSVSTPFIHLLTTHQVREKENCFSDVIRDVHMDDRVT 480
Query: 481 LTRWSKKHVTRASSKNSTNVIDXXXXXXXXXXXXWELTEAKSISKVEREQEKITAWEHLQ 540
LTRWSKKHVTRASSKNSTNVID WELTEAKSISKVEREQEKITAWEHLQ
Sbjct: 481 LTRWSKKHVTRASSKNSTNVIDVKKKTVESKSSSWELTEAKSISKVEREQEKITAWEHLQ 540
Query: 541 KAKAEAAIQKLVMKIEKKRSSSLDKIWNTLRSAQRRAQVMRETAAANQDEQSSGKAKRTS 600
KAKAEAAIQKLVMKIEKKRSSSLDKIWNTLRSAQRRAQVMRETAAANQDEQSSGKAKRTS
Sbjct: 541 KAKAEAAIQKLVMKIEKKRSSSLDKIWNTLRSAQRRAQVMRETAAANQDEQSSGKAKRTS 600
Query: 601 HLNKNGQISSLSGCFTCHAF 620
HLNKNGQISSLSGCFTCHAF
Sbjct: 601 HLNKNGQISSLSGCFTCHAF 620
>Os08g0471800 Remorin, C-terminal region domain containing protein
Length = 602
Score = 506 bits (1304), Expect = e-143, Method: Compositional matrix adjust.
Identities = 295/553 (53%), Positives = 358/553 (64%), Gaps = 15/553 (2%)
Query: 77 PLAGFVRADGDPDTDLETDGVATPSSNASAAFAEPHDEEEGDEVLCGVVEGDWAQLQEPT 136
PL FVR G P +DLE DG+ T SSNAS+ H+E+ G L GV W Q+Q P
Sbjct: 56 PLPSFVRHRGGPGSDLELDGLPTSSSNASSGS---HEEDHGP--LQGVKGEGWMQVQGPI 110
Query: 137 KSPADRTTGECLYQRRRSEAVLLQGRKGLKQRPASLDFGSGSPGFNGAPLSPGFVVGGVG 196
K+ A R+TGEC QR R +VL G+ KQRPAS+DFG S + SPGF+V G G
Sbjct: 111 KNSAARSTGECQDQRYRLGSVLFHGKNERKQRPASVDFGCPSVD-RSSTHSPGFLVNGTG 169
Query: 197 LMNKGLVSSSFIRSDVFPSPRTPNYRRHRSSVFGYQKGWSSERVPLASKGNRRYPGSSMA 256
MNKGL SS + SP TP+Y R ++V GYQ+GWSSERV L+S G RR+ G+SM
Sbjct: 170 AMNKGLSVSSQNKPGAPTSPGTPSYNRQGATVVGYQQGWSSERVALSSNGQRRHSGNSMV 229
Query: 257 FPFSNGRTLPSKWEDAERWIFSPNSSDVLEKTSFAPARRXXXXXXXXXXXXXXXXQYSSV 316
P + GRTLPSKWEDAERWIFSPN S+ L +TS +RR YSSV
Sbjct: 230 LPHNTGRTLPSKWEDAERWIFSPNPSNALGRTSIPQSRRPKAKSGPLGPPGRFSEPYSSV 289
Query: 317 S----LLDNGRVGHLTANSPFLAGVLIPEHYCGEKDNIGRYMSRTAGEEASIGIGGKSCL 372
S LLD GRVG+LTANSPFLAGVL+PEH C + GR +S +GE+ S G+GG+S
Sbjct: 290 SSSSYLLDTGRVGNLTANSPFLAGVLLPEHVCVSSSHAGRDLSGASGEDKSNGMGGRSGE 349
Query: 373 ANGGSHATQYNRVRRRLDTAIESSPSLPSTQASVQ---DEQVGITEESASIITPIILRKD 429
ANG A RV +R+D+A++SSPSLP++Q SVQ DEQ+ IT + + P I RKD
Sbjct: 350 ANGAHPAVWSTRVCQRMDSAVQSSPSLPTSQESVQACTDEQIEITTDLTTSSKPEISRKD 409
Query: 430 AAXXXXXXXXXXXXXXXXXXFIHLLTTHQVREKENCFSDV-IRDVHMDDRVTLTRWSKKH 488
A F L+ QV+E E+CFS + IRDV MDDRVTLTRWSKKH
Sbjct: 410 VATQTSPELSRSSSPSGRPSFSRSLSVQQVKELESCFSKLEIRDVQMDDRVTLTRWSKKH 469
Query: 489 VTRASSKNSTNVIDXXXXXXXXXXXXWELTE-AKSISKVEREQEKITAWEHLQKAKAEAA 547
VTR S KNSTN+I+ WE+TE AK ISK+E E+ K+TAWE+LQKAKAEAA
Sbjct: 470 VTRGSEKNSTNIIEWKKKTVESKSSAWEVTETAKCISKIEGEEAKMTAWENLQKAKAEAA 529
Query: 548 IQKLVMKIEKKRSSSLDKIWNTLRSAQRRAQVMRETAAANQDEQSSGKAKRTSHLNKNGQ 607
IQKLVMK+EKKRS SL++I+NTLRSA R+ V+R T N D+ S KR SHL+KNGQ
Sbjct: 530 IQKLVMKLEKKRSYSLERIFNTLRSAHRKTHVIRSTTTTNLDQHISRTVKRPSHLSKNGQ 589
Query: 608 ISSLSGCFTCHAF 620
+SSLSGCFTCHAF
Sbjct: 590 MSSLSGCFTCHAF 602
>Os02g0767000 Remorin, C-terminal region domain containing protein
Length = 423
Score = 258 bits (658), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 167/419 (39%), Positives = 233/419 (55%), Gaps = 22/419 (5%)
Query: 212 VFPSPRTPNYRRHRSSVFGYQKGWSSERVPLASKGNRRYPGSSMAFPFSNGRTLPSKWED 271
FPSP TPNY RH +S Y KGWSSERVPL NRRY GS + PF+NGR LPSKWED
Sbjct: 15 TFPSPGTPNYHRHCASTMQYPKGWSSERVPLGGGTNRRYGGSGVVLPFNNGRKLPSKWED 74
Query: 272 AERWIFSPNSSDVLEKTSFAPA---RRXXXXXXXXXXXXXXXXQYSSVSLLDNGRVG--- 325
AE+WI SP S D + + S APA RR Y++ S G
Sbjct: 75 AEKWILSPVSCDGIGRMS-APAPHHRRPKSKSGPLGHPGGIPGAYAAASPFVPCFDGVLA 133
Query: 326 --HLTANSPFLAGVLIPEHYCGEKDNIGRYMSRTAGEEASIGIGGKSCLANGGSHATQYN 383
+ A+SPF AGVL+PEH + GR S G++ S +S A + +
Sbjct: 134 AANFAAHSPFSAGVLMPEHVRNGDFSSGRGRS---GDDGS----SRSYSAEKDPYILRSA 186
Query: 384 RVRRRLDTAIESSPSLPSTQASVQDEQV-GITEESASIITPIILRKDAAXXXXXXXXXXX 442
+ +T +E+S ++ + QD+++ G+ E+ +I +PII +KD A
Sbjct: 187 SIHAWTETLMEASAFANISEETAQDDKLQGLRGETPAISSPII-KKDVATQMSPDDSISS 245
Query: 443 XXXXXXXFIHLLTTHQVRE-KENCFSDVIRDVHMDDRVTLTRWSKKHVTRASSKNSTNVI 501
L + H ++E N +RDV +DD+VT+TRWSK+HVTR S + STN++
Sbjct: 246 SPKARHSCSSLPSGHPIKEPNSNALKPEVRDVQVDDQVTVTRWSKRHVTRGSDRRSTNIV 305
Query: 502 DXXXXXXXXXXXXWELTEAKS-ISKVEREQEKITAWEHLQKAKAEAAIQKLVMKIEKKRS 560
+ ++ E +S +SK +RE+ KITAWE+LQKAKAEAAI+KL MK+EKKRS
Sbjct: 306 EWRKKTIETRAPSFDEKERESCVSKCKREEAKITAWENLQKAKAEAAIRKLEMKLEKKRS 365
Query: 561 SSLDKIWNTLRSAQRRAQVMRETAAANQDEQSSGKAKRTSHLNKNGQISSLSGCFTCHA 619
SS+D+I LR+AQ++AQ MR + ++D+ K+ S+L + G+ S S CFT A
Sbjct: 366 SSMDRILGKLRTAQKKAQDMRSAVSVSEDQCGVRATKKASYLRRTGK--SFSCCFTYRA 422
>Os03g0120200 Remorin, C-terminal region domain containing protein
Length = 423
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 65/102 (63%), Gaps = 1/102 (0%)
Query: 515 WELTE-AKSISKVEREQEKITAWEHLQKAKAEAAIQKLVMKIEKKRSSSLDKIWNTLRSA 573
WE E AK +++ +RE+ KI AWE+ QKAK EA ++++ KIE KR+ D++ + L +A
Sbjct: 318 WEEAEKAKYLARFQREEVKIQAWENHQKAKIEAEMKRMEAKIEIKRAREQDRLSSKLAAA 377
Query: 574 QRRAQVMRETAAANQDEQSSGKAKRTSHLNKNGQISSLSGCF 615
+ +A+ RE A + ++++++ ++ + + K G I S C+
Sbjct: 378 RHKAEARREAAESRKNQEAARTEEQAAQIRKTGHIPSSISCW 419
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.129 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 19,312,647
Number of extensions: 795794
Number of successful extensions: 1893
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1878
Number of HSP's successfully gapped: 6
Length of query: 620
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 513
Effective length of database: 11,448,903
Effective search space: 5873287239
Effective search space used: 5873287239
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 159 (65.9 bits)