BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0452200 Os09g0452200|AK106042
(401 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0452200 Similar to LysM-domain GPI-anchored protein 1 ... 666 0.0
Os06g0208800 Hypothetical protein 142 6e-34
Os09g0548200 Peptidoglycan-binding LysM domain containing p... 132 5e-31
Os03g0133400 Peptidoglycan-binding LysM domain containing p... 116 3e-26
Os02g0769200 Similar to LysM-domain GPI-anchored protein 1 ... 103 2e-22
>Os09g0452200 Similar to LysM-domain GPI-anchored protein 1 precursor. Splice
isoform 2
Length = 401
Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/368 (94%), Positives = 348/368 (94%)
Query: 34 TACPALLSYTLYADLKLAELAALFSADPLAILAANSIDFAVPDPADRILPAGLPLRVPVP 93
TACPALLSYTLYADLKLAELAALFSADPLAILAANSIDFAVPDPADRILPAGLPLRVPVP
Sbjct: 34 TACPALLSYTLYADLKLAELAALFSADPLAILAANSIDFAVPDPADRILPAGLPLRVPVP 93
Query: 94 CACSDGIRRVTTVRYVARPGDTLASVASSVYGGLTTPDWISDSNGILGAKPDAAVDAGTT 153
CACSDGIRRVTTVRYVARPGDTLASVASSVYGGLTTPDWISDSNGILGAKPDAAVDAGTT
Sbjct: 94 CACSDGIRRVTTVRYVARPGDTLASVASSVYGGLTTPDWISDSNGILGAKPDAAVDAGTT 153
Query: 154 LFVPLHCACFGGVDNGLPAVYLTYVAGKGDTVAAVAQRYRTTATDLMSVNDMATPELAAG 213
LFVPLHCACFGGVDNGLPAVYLTYVAGKGDTVAAVAQRYRTTATDLMSVNDMATPELAAG
Sbjct: 154 LFVPLHCACFGGVDNGLPAVYLTYVAGKGDTVAAVAQRYRTTATDLMSVNDMATPELAAG 213
Query: 214 DIIVVPLPACTSSFPAFTADYGLAVANGTYAVTANRCVQCSCGPGNLDLFCVPAPLADST 273
DIIVVPLPACTSSFPAFTADYGLAVANGTYAVTANRCVQCSCGPGNLDLFCVPAPLADST
Sbjct: 214 DIIVVPLPACTSSFPAFTADYGLAVANGTYAVTANRCVQCSCGPGNLDLFCVPAPLADST 273
Query: 274 CSSMQCANSSMMLGNFTLLMTSSGCSVTSCSYGGFVNGTILTTLTTALKPQCPGPHQYPP 333
CSSMQCANSSMMLGNFTLLMTSSGCSVTSCSYGGFVNGTILTTLTTALKPQCPGPHQYPP
Sbjct: 274 CSSMQCANSSMMLGNFTLLMTSSGCSVTSCSYGGFVNGTILTTLTTALKPQCPGPHQYPP 333
Query: 334 LIPPPTSSFFETYLGPSPTPMASEGGVXXXXXXXXXXXXXXXXXXXXRHVVGDVLGAFAL 393
LIPPPTSSFFETYLGPSPTPMASEGGV RHVVGDVLGAFAL
Sbjct: 334 LIPPPTSSFFETYLGPSPTPMASEGGVMAGMAPTSTPAASSGPPPAGRHVVGDVLGAFAL 393
Query: 394 CLVGNLLW 401
CLVGNLLW
Sbjct: 394 CLVGNLLW 401
>Os06g0208800 Hypothetical protein
Length = 163
Score = 142 bits (357), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 71/117 (60%), Positives = 85/117 (72%), Gaps = 1/117 (0%)
Query: 243 YAVTANRCVQCSCGPGNLDLFCVPAPLADSTCSSMQCANSSMMLGNFTLLMTSSGCSVTS 302
YA+TA CVQCSCGPG+L L+C PA L S CSSMQC NS++MLGN T TS GC+V+S
Sbjct: 1 YALTAGNCVQCSCGPGDLKLYCTPASLTAS-CSSMQCPNSNLMLGNVTAQSTSGGCNVSS 59
Query: 303 CSYGGFVNGTILTTLTTALKPQCPGPHQYPPLIPPPTSSFFETYLGPSPTPMASEGG 359
CSY G VNGTI T+L++ L+P CPGPHQ+PPL P + +YL PSP P A E G
Sbjct: 60 CSYAGLVNGTIATSLSSGLQPTCPGPHQFPPLRATPIAVNQGSYLAPSPAPGAGEAG 116
>Os09g0548200 Peptidoglycan-binding LysM domain containing protein
Length = 373
Score = 132 bits (332), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 110/295 (37%), Positives = 156/295 (52%), Gaps = 25/295 (8%)
Query: 36 CPALLSYTLYADLKLAELAALFS-ADPLAILAANSIDFAVPDPADRILPAGLPLRVPVPC 94
C AL++Y LA + ALF A+LA+N + P PA PLRV +PC
Sbjct: 45 CQALVAYAPPNATTLAAVRALFQLRSHRALLASNGL----PLSTPPSAPAPSPLRVRLPC 100
Query: 95 ACSDG----IRRVTTVRYVARPGDTLASVASSVYGGLTTPDWISDSNGILGAKPDAAVDA 150
CS G +R T Y R GDTL ++A V+ GL T I+ +N + + P+ +
Sbjct: 101 LCSGGAGATFQRPT---YRIRAGDTLDAIARGVFAGLVTYQDIAAANNV--SDPNK-IAV 154
Query: 151 GTTLFVPLHCACFGGVDNGLPAVYLTYVAGKGDTVAAVAQRYRTTATDLMSVNDMATPE- 209
G L++P+ C+C G P V+ TYV G +VAA+AQ + TT ++++N M +
Sbjct: 155 GQELWIPVPCSC--DPVAGQPVVHYTYVVPPGASVAAIAQDFATTEATVLALNRMPDAKS 212
Query: 210 LAAGDIIVVPLPACTSSFPAFTADYGLAVANGTYAVTANRCVQCSCGPGNLDLFCVPAP- 268
L AG ++ VPL AC+S+ + D L V NG+Y +TAN C+ C C L C P
Sbjct: 213 LLAGQVLDVPLRACSSAISSTAIDRNLLVPNGSYILTANNCIMCGCSSYTWQLDCQPTQG 272
Query: 269 LADSTCSSMQCANSSMMLGNFTLLMTSSGCSVTSCSYGGFVNG---TILTTLTTA 320
++ S C + +C + M LGN T TSS C T+CSY G+ N TIL LTT+
Sbjct: 273 ISSSFCPASKCGD--MFLGNTTTSPTSS-CESTACSYAGYTNSTSFTILANLTTS 324
>Os03g0133400 Peptidoglycan-binding LysM domain containing protein
Length = 356
Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 93/312 (29%), Positives = 148/312 (47%), Gaps = 30/312 (9%)
Query: 34 TACPALLSYTLYADLKLAELAALFSADPL-AILAANSIDFAVPDPADRILP--AGLPLRV 90
T C + + YT L A F+ L +L AN +PD P A +++
Sbjct: 39 TTCKSAILYTSPNATTYGNLVARFNTTTLPDLLGAN----GLPDGTLSSAPVAANSTVKI 94
Query: 91 PVPCACSDGIRRVTTV-RYVARPGDTLASVASSVYGGLTTPDWISDSNGILGAKPD-AAV 148
P C C+ + + + YV +P D L ++A +V+ T I+ +N I PD +
Sbjct: 95 PFRCRCNGDVGQSDRLPIYVVQPQDGLDAIARNVFNAFVTYQEIAAANNI----PDPNKI 150
Query: 149 DAGTTLFVPLHCACFGGVDNGLPAVYLTYVAGKGDTVAAVAQRYRTTATDLMSVNDMATP 208
+ TL++PL C+C + G ++L Y GKG+ +A+A +Y T + L++ N + P
Sbjct: 151 NVSQTLWIPLPCSC--DKEEGSNVMHLAYSVGKGENTSAIAAKYGVTESTLLTRNKIDDP 208
Query: 209 -ELAAGDIIVVPLPACTSSFPAFTADYGLAVA-NGTYAVTANRCVQCSCGPGNLDLFCVP 266
+L G I+ VPLP C SS +AD+ L + +GTY TA C++CSC L C
Sbjct: 209 TKLQMGQILDVPLPVCRSSISDTSADHNLMLLPDGTYGFTAGNCIRCSCSSTTYQLNCT- 267
Query: 267 APLADSTCSSMQCANSSMMLGNFTLLMTSSGCSVTSCSYGGFVNGTIL-------TTLTT 319
+ + C S+ N ++ LG +GC T+C+Y G+ N + L T TT
Sbjct: 268 -AVQNKGCPSVPLCNGTLKLGE----TNGTGCGSTTCAYSGYSNSSSLIIQTSLATNQTT 322
Query: 320 ALKPQCPGPHQY 331
A + G Q+
Sbjct: 323 ACQRGGSGRSQF 334
>Os02g0769200 Similar to LysM-domain GPI-anchored protein 1 precursor. Splice
isoform 2
Length = 178
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/101 (54%), Positives = 72/101 (71%), Gaps = 2/101 (1%)
Query: 260 LDLFCVPAPLADSTCSSMQCANSSMMLGNFTLLMTSSGCSVTSCSYGGFVNGTILTTLTT 319
L L+C PA L S C SMQC+NS+++LGN + TS+GC+V+SCSYGGFVNGTI T L+T
Sbjct: 19 LSLYCTPASLTGS-CPSMQCSNSNVLLGNVSARSTSAGCNVSSCSYGGFVNGTITTLLST 77
Query: 320 ALKPQCPGPHQYPPLIPPPTS-SFFETYLGPSPTPMASEGG 359
L+ +CPGPHQ+P L PPT+ + T+L P P +E G
Sbjct: 78 GLQSRCPGPHQFPELTEPPTTVNHDSTFLPPLSAPGPAEAG 118
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.136 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,569,480
Number of extensions: 627279
Number of successful extensions: 2525
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 2508
Number of HSP's successfully gapped: 7
Length of query: 401
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 298
Effective length of database: 11,657,759
Effective search space: 3474012182
Effective search space used: 3474012182
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)