Os03g0133400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidoglycan-binding LysM domain containing protein.
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Os03g0133400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidoglycan-binding LysM domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 162.89 | 0.6 | 8.64 | -2.84 | 1.06 | -1.18 | 0.657 | 0.361 | -0.445 | 11.1 | 37.76 | 4101 | -- | -- |
| 163.01 | 0.595 | 8.64 | -2.84 | 1.06 | -1.18 | 0.682 | -- | -0.448 | 11.1 | 37.74 | 4121 | -- | -- |
| 164.65 | 0.598 | 8.64 | -2.82 | 1.06 | -1.16 | -- | 0.459 | -0.447 | 11.1 | 37.74 | 4121 | -- | -- |
| 165.01 | 0.598 | 8.64 | -2.8 | 1.06 | -1.16 | -- | -- | -0.446 | 11.2 | 37.76 | 4121 | -- | -- |
| 223.68 | 0.697 | 8.67 | -2.91 | -- | -0.986 | -- | 0.731 | -0.669 | -- | 37.68 | 14771 | -- | -- |
| 197.77 | 0.659 | 8.64 | -3.02 | 0.925 | -- | 0.728 | -- | -0.407 | 11 | -- | -- | -- | -- |
| 199.99 | 0.662 | 8.64 | -2.99 | 0.921 | -- | -- | -- | -0.404 | 11.1 | -- | -- | -- | -- |
| 216.34 | 0.685 | 8.66 | -2.72 | -- | -1.22 | -- | -- | -0.462 | -- | 36.99 | 4641 | -- | -- |
| 302.98 | 0.811 | 8.67 | -- | 1.2 | -1.83 | -- | -- | -0.592 | 10.7 | 39 | 24142 | -- | -- |
| 252.85 | 0.743 | 8.66 | -3.02 | -- | -- | -- | -- | -0.411 | -- | -- | -- | -- | -- |
| 436.3 | 0.977 | 8.56 | -- | 0.949 | -- | -- | -- | -0.0703 | 11.3 | -- | -- | -- | -- |
| 315.28 | 0.827 | 8.76 | -- | -- | -2.02 | -- | -- | -0.443 | -- | 49.83 | 29315 | -- | -- |
| 492.72 | 1.04 | 8.58 | -- | -- | -- | -- | -- | -0.0766 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 155.30 | wind | 1 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 2 | 156.20 | wind | 1 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 3 | 158.28 | wind | 1 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 5 | 158.68 | wind | 5 | 90 | < th | dose independent | rect. | 9 | 18 |
| 7 | 159.40 | radiation | 20 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 9 | 159.56 | wind | 1 | 43200 | < th | dose independent | rect. | 3 | 5 |
| 11 | 159.94 | radiation | 20 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 31 | 160.41 | wind | 1 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 40 | 161.49 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 9 |
| 55 | 161.71 | radiation | 20 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 60 | 161.97 | temperature | 10 | 270 | > th | dose dependent | rect. | 18 | 7 |
| 65 | 162.23 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 8 |
| 67 | 162.33 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 8 |
| 73 | 162.51 | radiation | 40 | 4320 | < th | dose independent | rect. | 14 | 21 |
| 98 | 162.91 | radiation | 20 | 14400 | > th | dose dependent | rect. | 16 | 16 |
| 103 | 163.24 | wind | 1 | 90 | > th | dose dependent | rect. | 12 | 8 |
| 104 | 163.25 | radiation | 20 | 14400 | < th | dose independent | rect. | 16 | 16 |
| 105 | 163.30 | radiation | 40 | 4320 | < th | dose independent | sin | 11 | NA |
| 106 | 163.34 | radiation | 10 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 109 | 163.37 | wind | 7 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 112 | 163.43 | radiation | 20 | 14400 | < th | dose independent | rect. | 21 | 11 |
| 116 | 163.44 | radiation | 20 | 14400 | < th | dose independent | rect. | 19 | 13 |
| 153 | 164.02 | temperature | 20 | 270 | > th | dose independent | rect. | 18 | 7 |
| 160 | 164.07 | radiation | 20 | 4320 | < th | dose independent | rect. | 14 | 19 |
| 179 | 164.17 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 11 |
| 181 | 164.19 | temperature | 10 | 270 | > th | dose dependent | rect. | 19 | 16 |
| 183 | 164.26 | wind | 9 | 90 | < th | dose dependent | rect. | 9 | 18 |
| 186 | 164.37 | radiation | 40 | 270 | < th | dose independent | rect. | 6 | 7 |
| 195 | 164.51 | radiation | 20 | 4320 | > th | dose dependent | rect. | 14 | 20 |
| 206 | 164.58 | humidity | 80 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 213 | 164.60 | wind | 1 | 43200 | > th | dose dependent | rect. | 4 | 2 |
| 218 | 164.64 | radiation | 20 | 4320 | < th | dose independent | sin | 11 | NA |
| 223 | 164.67 | radiation | 20 | 14400 | > th | dose dependent | rect. | 6 | 3 |
| 270 | 165.02 | radiation | 1 | 4320 | > th | dose dependent | rect. | 17 | 18 |
| 271 | 165.04 | radiation | 20 | 4320 | > th | dose dependent | sin | 12 | NA |
| 277 | 165.12 | radiation | 1 | 4320 | > th | dose dependent | rect. | 7 | 4 |
| 281 | 165.17 | humidity | 70 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 283 | 165.17 | wind | 1 | 270 | > th | dose independent | rect. | 12 | 18 |
| 293 | 165.22 | radiation | 1 | 4320 | > th | dose dependent | rect. | 4 | 7 |
| 325 | 165.34 | radiation | 40 | 270 | < th | dose independent | rect. | 7 | 18 |
| 327 | 165.36 | radiation | 1 | 4320 | > th | dose dependent | sin | 11 | NA |
| 337 | 165.44 | radiation | 10 | 43200 | < th | dose dependent | rect. | 7 | 4 |
| 358 | 165.54 | radiation | 40 | 4320 | < th | dose dependent | rect. | 7 | 4 |
| 361 | 165.61 | wind | 5 | 270 | < th | dose independent | rect. | 16 | 9 |
| 373 | 165.66 | radiation | 40 | 4320 | < th | dose dependent | rect. | 17 | 18 |
| 377 | 165.70 | radiation | 10 | 43200 | < th | dose dependent | rect. | 8 | 2 |
| 381 | 165.73 | radiation | 40 | 4320 | < th | dose dependent | sin | 11 | NA |
| 383 | 165.75 | radiation | 40 | 4320 | < th | dose dependent | rect. | 21 | 14 |
| 384 | 165.75 | radiation | 40 | 4320 | < th | dose dependent | rect. | 19 | 16 |
| 396 | 165.79 | radiation | 40 | 4320 | < th | dose dependent | rect. | 1 | 10 |
| 414 | 165.87 | humidity | 60 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 439 | 165.92 | radiation | 10 | 4320 | < th | dose dependent | rect. | 17 | 15 |
| 456 | 165.97 | radiation | 40 | 4320 | > th | dose independent | rect. | 13 | 22 |
| 522 | 166.05 | humidity | 60 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 612 | 166.28 | humidity | 50 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 619 | 166.31 | humidity | 70 | 43200 | < th | dose independent | rect. | 18 | 15 |
| 632 | 166.37 | humidity | 70 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 706 | 166.47 | radiation | 40 | 4320 | < th | dose independent | rect. | 7 | 21 |
| 716 | 166.48 | radiation | 40 | 4320 | < th | dose independent | rect. | 21 | 20 |
| 736 | 166.50 | radiation | 40 | 4320 | < th | dose independent | rect. | 7 | 10 |
| 748 | 166.50 | radiation | 10 | 4320 | < th | dose dependent | rect. | 21 | 11 |
| 754 | 166.51 | radiation | 40 | 4320 | < th | dose independent | rect. | 1 | 16 |
| 773 | 166.52 | radiation | 40 | 4320 | < th | dose independent | no | NA | NA |
| 787 | 166.52 | radiation | 40 | 4320 | < th | dose independent | rect. | 1 | 23 |
| 833 | 166.54 | radiation | 10 | 43200 | > th | dose independent | rect. | 11 | 21 |
| 862 | 166.56 | radiation | 20 | 14400 | > th | dose independent | sin | 12 | NA |
| 884 | 166.57 | radiation | 10 | 4320 | < th | dose dependent | rect. | 1 | 7 |
| 921 | 166.62 | temperature | 30 | 4320 | < th | dose independent | rect. | 12 | 3 |
| 935 | 166.63 | radiation | 40 | 270 | < th | dose dependent | rect. | 7 | 18 |
| 952 | 166.69 | radiation | 40 | 4320 | < th | dose independent | rect. | 9 | 23 |
| 962 | 166.73 | atmosphere | 1015 | 270 | < th | dose independent | rect. | 17 | 8 |
| 980 | 166.79 | temperature | 20 | 270 | > th | dose independent | rect. | 7 | 18 |