BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0133400 Os03g0133400|AK073032
(356 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0133400 Peptidoglycan-binding LysM domain containing p... 674 0.0
Os09g0548200 Peptidoglycan-binding LysM domain containing p... 239 2e-63
Os11g0548600 204 7e-53
Os11g0549300 187 1e-47
Os09g0452200 Similar to LysM-domain GPI-anchored protein 1 ... 115 6e-26
>Os03g0133400 Peptidoglycan-binding LysM domain containing protein
Length = 356
Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/327 (100%), Positives = 327/327 (100%)
Query: 30 NFTCAVASGTTCKSAILYTSPNATTYGNLVARFNTTTLPDLLGANGLPDGTLSSAPVAAN 89
NFTCAVASGTTCKSAILYTSPNATTYGNLVARFNTTTLPDLLGANGLPDGTLSSAPVAAN
Sbjct: 30 NFTCAVASGTTCKSAILYTSPNATTYGNLVARFNTTTLPDLLGANGLPDGTLSSAPVAAN 89
Query: 90 STVKIPFRCRCNGDVGQSDRLPIYVVQPQDGLDAIARNVFNAFVTYQEIAAANNIPDPNK 149
STVKIPFRCRCNGDVGQSDRLPIYVVQPQDGLDAIARNVFNAFVTYQEIAAANNIPDPNK
Sbjct: 90 STVKIPFRCRCNGDVGQSDRLPIYVVQPQDGLDAIARNVFNAFVTYQEIAAANNIPDPNK 149
Query: 150 INVSQTLWIPLPCSCDKEEGSNVMHLAYSVGKGENTSAIAAKYGVTESTLLTRNKIDDPT 209
INVSQTLWIPLPCSCDKEEGSNVMHLAYSVGKGENTSAIAAKYGVTESTLLTRNKIDDPT
Sbjct: 150 INVSQTLWIPLPCSCDKEEGSNVMHLAYSVGKGENTSAIAAKYGVTESTLLTRNKIDDPT 209
Query: 210 KLQMGQILDVPLPVCRSSISDTSADHNLMLLPDGTYGFTAGNCIRCSCSSTTYQLNCTAV 269
KLQMGQILDVPLPVCRSSISDTSADHNLMLLPDGTYGFTAGNCIRCSCSSTTYQLNCTAV
Sbjct: 210 KLQMGQILDVPLPVCRSSISDTSADHNLMLLPDGTYGFTAGNCIRCSCSSTTYQLNCTAV 269
Query: 270 QNKGCPSVPLCNGTLKLGETNGTGCGSTTCAYSGYSNSSSLIIQTSLATNQTTACQRGGS 329
QNKGCPSVPLCNGTLKLGETNGTGCGSTTCAYSGYSNSSSLIIQTSLATNQTTACQRGGS
Sbjct: 270 QNKGCPSVPLCNGTLKLGETNGTGCGSTTCAYSGYSNSSSLIIQTSLATNQTTACQRGGS 329
Query: 330 GRSQFARSMWSMSVISFHMVLIIICFL 356
GRSQFARSMWSMSVISFHMVLIIICFL
Sbjct: 330 GRSQFARSMWSMSVISFHMVLIIICFL 356
>Os09g0548200 Peptidoglycan-binding LysM domain containing protein
Length = 373
Score = 239 bits (611), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 139/334 (41%), Positives = 193/334 (57%), Gaps = 20/334 (5%)
Query: 38 GTTCKSAILYTSPNATTYGNLVARFNTTTLPDLLGANGLPDGTLSSAPVAANSTVKIPFR 97
+TC++ + Y PNATT + A F + LL +NGLP T SAP + V++P
Sbjct: 42 ASTCQALVAYAPPNATTLAAVRALFQLRSHRALLASNGLPLSTPPSAPAPSPLRVRLP-- 99
Query: 98 CRCNGDVGQSDRLPIYVVQPQDGLDAIARNVFNAFVTYQEIAAANNIPDPNKINVSQTLW 157
C C+G G + + P Y ++ D LDAIAR VF VTYQ+IAAANN+ DPNKI V Q LW
Sbjct: 100 CLCSGGAGATFQRPTYRIRAGDTLDAIARGVFAGLVTYQDIAAANNVSDPNKIAVGQELW 159
Query: 158 IPLPCSCDKEEGSNVMHLAYSVGKGENTSAIAAKYGVTESTLLTRNKIDDPTKLQMGQIL 217
IP+PCSCD G V+H Y V G + +AIA + TE+T+L N++ D L GQ+L
Sbjct: 160 IPVPCSCDPVAGQPVVHYTYVVPPGASVAAIAQDFATTEATVLALNRMPDAKSLLAGQVL 219
Query: 218 DVPLPVCRSSISDTSADHNLMLLPDGTYGFTAGNCIRCSCSSTTYQLNCTAVQ---NKGC 274
DVPL C S+IS T+ D NL L+P+G+Y TA NCI C CSS T+QL+C Q + C
Sbjct: 220 DVPLRACSSAISSTAIDRNL-LVPNGSYILTANNCIMCGCSSYTWQLDCQPTQGISSSFC 278
Query: 275 PSVPLCNGTLKLGETN---GTGCGSTTCAYSGYSNSSSLIIQTSLATNQT-------TAC 324
P+ G + LG T + C ST C+Y+GY+NS+S I +L T+ T
Sbjct: 279 PASKC--GDMFLGNTTTSPTSSCESTACSYAGYTNSTSFTILANLTTSSTCNAAAMSPMA 336
Query: 325 QRGGSGRSQFARSM--WSMSVISFHMVLIIICFL 356
Q+ S + A + W+ ++ H++ + + FL
Sbjct: 337 QQAHSSAFRLASTWLRWTELIVCLHVIFLCVSFL 370
>Os11g0548600
Length = 226
Score = 204 bits (520), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 104/193 (53%), Positives = 128/193 (66%), Gaps = 3/193 (1%)
Query: 30 NFTCAVASGTTCKSAILYTSPNATTYGNLVARFNTTTLPDLLGANGLPDGTLSSAPVAAN 89
NFTC TTC+SAI+YT P ATTY L++ F TTTL DL ANGLP T S + N
Sbjct: 27 NFTCTWP--TTCQSAIVYTPPAATTYIELLSSFETTTLRDLFDANGLPPSTPSHTAIPTN 84
Query: 90 STVKIPFRCRCNGDVGQSDRLPIYVVQPQDGLDAIARNVFNAFVTYQEIAAANNIPDPNK 149
+TV +PFRC C + + P +++Q D + IA F+ FVTYQEIAAA+NI +P+
Sbjct: 85 ATVIVPFRCSCVAGANRPESQPFHIIQINDNMSYIAAQ-FDDFVTYQEIAAASNISNPDF 143
Query: 150 INVSQTLWIPLPCSCDKEEGSNVMHLAYSVGKGENTSAIAAKYGVTESTLLTRNKIDDPT 209
+ V Q LWIPLPCSCD+ EG+NV H AY V +N S IAA++GV ESTLL N I DP
Sbjct: 144 LEVGQELWIPLPCSCDQVEGNNVTHFAYKVRAADNVSKIAARFGVKESTLLKINGITDPK 203
Query: 210 KLQMGQILDVPLP 222
L GQILDVP+P
Sbjct: 204 NLTQGQILDVPVP 216
>Os11g0549300
Length = 571
Score = 187 bits (475), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 106/196 (54%), Positives = 124/196 (63%), Gaps = 16/196 (8%)
Query: 30 NFTCAVASGTTCKSAILYTSPNATTYGNLVARFNTTTLPDLLGANGLPDGTLS-SAPVAA 88
NFTC C+SAI YT+ NATTY L++ FNT+TL +LL ANGLP + + A
Sbjct: 33 NFTCTTVQAA-CQSAIGYTTRNATTYAELLSLFNTSTLAELLRANGLPPTAMPPDTAIPA 91
Query: 89 NSTVKIPFRCRCN--GDVGQSDRLPIYVVQPQDGLDAIARNVFNAFVTYQEIAAANNIPD 146
+TV +PFRC CN VG+SD PIY+V QDGLDAIAR VF+ FVTYQEIA A+NIPD
Sbjct: 92 AATVTVPFRCLCNVATRVGRSDYRPIYLVGSQDGLDAIARKVFDGFVTYQEIADASNIPD 151
Query: 147 PNKINVSQTLWIPLPCSCDKEEGSNVMHLAYSVGKGENTSAIAAKYGVTESTLLTRNKID 206
PNKI V Q LWIP V + TSAIAAK+GV ESTL+ N I
Sbjct: 152 PNKIFVGQELWIPAALQL------------RPVRAVDTTSAIAAKFGVLESTLMRINGIT 199
Query: 207 DPTKLQMGQILDVPLP 222
DP L GQILDVP+P
Sbjct: 200 DPKNLVQGQILDVPIP 215
>Os09g0452200 Similar to LysM-domain GPI-anchored protein 1 precursor. Splice
isoform 2
Length = 401
Score = 115 bits (287), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 87/287 (30%), Positives = 140/287 (48%), Gaps = 23/287 (8%)
Query: 36 ASGTTCKSAILYTSPNATTYGNLVARFNTTTLPDLLGAN----GLPDGTLSSAPVAANST 91
+S T C + + YT L A F+ L +L AN +PD P A
Sbjct: 31 SSSTACPALLSYTLYADLKLAELAALFSADPL-AILAANSIDFAVPDPADRILP--AGLP 87
Query: 92 VKIPFRCRCNGDVGQSDRLPIYVVQPQDGLDAIARNVFNAFVTYQEIAAANNI----PDP 147
+++P C C+ + + + YV +P D L ++A +V+ T I+ +N I PD
Sbjct: 88 LRVPVPCACSDGIRRVTTV-RYVARPGDTLASVASSVYGGLTTPDWISDSNGILGAKPD- 145
Query: 148 NKINVSQTLWIPLPCSC--DKEEGSNVMHLAYSVGKGENTSAIAAKYGVTESTLLTRNKI 205
++ TL++PL C+C + G ++L Y GKG+ +A+A +Y T + L++ N +
Sbjct: 146 AAVDAGTTLFVPLHCACFGGVDNGLPAVYLTYVAGKGDTVAAVAQRYRTTATDLMSVNDM 205
Query: 206 DDPTKLQMGQILDVPLPVCRSSISDTSADHNLMLLPDGTYGFTAGNCIRCSCSSTTYQLN 265
P +L G I+ VPLP C SS +AD+ L + +GTY TA C++CSC L
Sbjct: 206 ATP-ELAAGDIIVVPLPACTSSFPAFTADYGLAVA-NGTYAVTANRCVQCSCGPGNLDLF 263
Query: 266 CT--AVQNKGCPSVPLCNGTLKLGE----TNGTGCGSTTCAYSGYSN 306
C + + C S+ N ++ LG +GC T+C+Y G+ N
Sbjct: 264 CVPAPLADSTCSSMQCANSSMMLGNFTLLMTSSGCSVTSCSYGGFVN 310
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.131 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,873,781
Number of extensions: 515072
Number of successful extensions: 1261
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1235
Number of HSP's successfully gapped: 6
Length of query: 356
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 254
Effective length of database: 11,709,973
Effective search space: 2974333142
Effective search space used: 2974333142
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)