Os11g0549300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os11g0549300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 224.31 | 0.704 | 4.12 | 4.46 | 1.05 | -2.49 | 1.91 | 0.0114 | 0.818 | 1.63 | 26.3 | 5713 | -- | -- |
| 219.77 | 0.69 | 4.14 | 4.42 | 1.06 | -2.4 | 1.95 | -- | 0.718 | 1.69 | 26.8 | 5698 | -- | -- |
| 234.5 | 0.713 | 4.14 | 4.44 | 0.957 | -2.41 | -- | 0.282 | 0.776 | 1.8 | 26.99 | 5902 | -- | -- |
| 234.36 | 0.713 | 4.14 | 4.33 | 0.968 | -2.36 | -- | -- | 0.736 | 1.78 | 26.96 | 5902 | -- | -- |
| 287.64 | 0.79 | 4.11 | 4.42 | -- | -2.28 | -- | 0.284 | 0.814 | -- | 27.1 | 6058 | -- | -- |
| 408.96 | 0.948 | 4.25 | 3.41 | 0.912 | -- | 1.66 | -- | 0.268 | 1.55 | -- | -- | -- | -- |
| 419.78 | 0.959 | 4.25 | 3.35 | 0.919 | -- | -- | -- | 0.257 | 1.84 | -- | -- | -- | -- |
| 287.78 | 0.79 | 4.13 | 4.34 | -- | -2.27 | -- | -- | 0.792 | -- | 27.2 | 6055 | -- | -- |
| 645.2 | 1.18 | 4.32 | -- | 1.11 | -1.25 | -- | -- | -0.0435 | 1.85 | 28.8 | 5509 | -- | -- |
| 470.91 | 1.01 | 4.24 | 3.39 | -- | -- | -- | -- | 0.278 | -- | -- | -- | -- | -- |
| 715.95 | 1.25 | 4.34 | -- | 0.981 | -- | -- | -- | -0.116 | 1.93 | -- | -- | -- | -- |
| 703.22 | 1.24 | 4.31 | -- | -- | -1.22 | -- | -- | -0.0249 | -- | 29.3 | 6082 | -- | -- |
| 774.04 | 1.3 | 4.33 | -- | -- | -- | -- | -- | -0.0981 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 217.12 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 27 | 221.05 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 17 | 2 |
| 124 | 224.51 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 16 | 14 |
| 133 | 224.83 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 16 | 4 |
| 177 | 225.68 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 185 | 225.77 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 13 | NA |
| 200 | 226.05 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 17 | 12 |
| 210 | 226.22 | wind | 5.0 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 226 | 226.56 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 228 | 226.58 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 254 | 226.74 | temperature | 10.0 | 14400 | > th | dose dependent | sin | 17 | NA |
| 259 | 226.84 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 261 | 226.87 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 262 | 226.87 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 2 |
| 267 | 226.93 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 15 | 5 |
| 272 | 226.99 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 282 | 227.09 | temperature | 20.0 | 14400 | > th | dose dependent | sin | 18 | NA |
| 284 | 227.12 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 17 | 12 |
| 314 | 227.44 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 327 | 227.56 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 328 | 227.57 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 17 | 5 |
| 332 | 227.59 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 17 | 8 |
| 338 | 227.62 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 16 | 5 |
| 388 | 228.14 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 17 | 3 |
| 399 | 228.24 | wind | 5.0 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 409 | 228.32 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 16 | 5 |
| 469 | 228.84 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 481 | 228.92 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 14 | 10 |
| 490 | 228.98 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 511 | 229.13 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 524 | 229.24 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 536 | 229.34 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 14 | 10 |
| 582 | 229.63 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 591 | 229.67 | temperature | 30.0 | 14400 | < th | dose dependent | sin | 17 | NA |
| 592 | 229.67 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 5 | 2 |
| 613 | 229.76 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 632 | 229.83 | temperature | 25.0 | 14400 | < th | dose independent | sin | 16 | NA |
| 674 | 230.05 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 709 | 230.20 | temperature | 25.0 | 14400 | > th | dose independent | sin | 16 | NA |
| 738 | 230.33 | radiation | 30.0 | 14400 | < th | dose dependent | rect. | 18 | 4 |
| 771 | 230.43 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 5 | 8 |
| 885 | 230.80 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 5 |
| 929 | 230.94 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 988 | 231.16 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 16 | 19 |