Os09g0548200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidoglycan-binding LysM domain containing protein.
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Os09g0548200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidoglycan-binding LysM domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 86.49 | 0.437 | 3.18 | 0.0711 | 0.111 | -2.24 | -0.508 | 9.91 | 0.0183 | 8.93 | 49 | 361 | -- | -- |
| 93.79 | 0.451 | 3.21 | -0.0629 | 0.0587 | 0.631 | -0.612 | -- | 0.0393 | 9.83 | 48.35 | 3010 | -- | -- |
| 87.27 | 0.435 | 3.18 | 0.0329 | 0.129 | -2.37 | -- | 10.4 | 0.0162 | 7.6 | 48.35 | 360 | -- | -- |
| 91.5 | 0.446 | 3.22 | -0.153 | 0.112 | 0.751 | -- | -- | 0.0325 | 9.72 | 48.54 | 4737 | -- | -- |
| 88.05 | 0.437 | 3.18 | 0.0428 | -- | -3.16 | -- | 12.2 | 0.0128 | -- | 48.59 | 353 | -- | -- |
| 95.32 | 0.458 | 3.22 | 0.0465 | 0.106 | -- | -0.691 | -- | 0.0143 | 8.16 | -- | -- | -- | -- |
| 96.72 | 0.461 | 3.22 | 0.0278 | 0.108 | -- | -- | -- | 0.0154 | 9.21 | -- | -- | -- | -- |
| 92.1 | 0.447 | 3.24 | -0.117 | -- | 1.22 | -- | -- | -0.0717 | -- | 48.08 | 511 | -- | -- |
| 92 | 0.447 | 3.21 | -- | 0.119 | 0.663 | -- | -- | 0.0422 | 8.97 | 48.73 | 4737 | -- | -- |
| 97.4 | 0.461 | 3.22 | 0.0274 | -- | -- | -- | -- | 0.016 | -- | -- | -- | -- | -- |
| 96.74 | 0.46 | 3.22 | -- | 0.108 | -- | -- | -- | 0.0123 | 9.19 | -- | -- | -- | -- |
| 88.78 | 0.439 | 3.23 | -- | -- | 1.71 | -- | -- | 0.033 | -- | 47 | 352 | -- | -- |
| 97.42 | 0.461 | 3.22 | -- | -- | -- | -- | -- | 0.0129 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 74.42 | wind | 1.0 | 30 | < th | dose independent | rect. | 17 | 1 |
| 12 | 74.42 | wind | 1.0 | 30 | < th | dose dependent | rect. | 17 | 1 |
| 23 | 75.17 | humidity | 70.0 | 90 | < th | dose independent | rect. | 17 | 1 |
| 39 | 75.50 | humidity | 70.0 | 90 | < th | dose dependent | rect. | 17 | 1 |
| 93 | 76.33 | wind | 1.0 | 10 | < th | dose independent | rect. | 15 | 7 |
| 96 | 77.01 | wind | 1.0 | 10 | < th | dose dependent | rect. | 15 | 7 |
| 100 | 77.09 | wind | 1.0 | 10 | < th | dose independent | rect. | 21 | 1 |
| 104 | 77.09 | wind | 1.0 | 10 | < th | dose dependent | rect. | 21 | 1 |
| 202 | 82.88 | wind | 1.0 | 10 | < th | dose independent | rect. | 14 | 4 |
| 232 | 83.00 | humidity | 50.0 | 270 | < th | dose dependent | rect. | 14 | 4 |
| 252 | 83.08 | humidity | 50.0 | 270 | < th | dose independent | rect. | 14 | 3 |
| 295 | 83.80 | humidity | 50.0 | 270 | < th | dose dependent | sin | 12 | NA |
| 320 | 84.13 | humidity | 50.0 | 270 | < th | dose independent | sin | 12 | NA |
| 328 | 84.95 | humidity | 50.0 | 270 | > th | dose independent | sin | 12 | NA |
| 405 | 86.16 | temperature | 30.0 | 270 | > th | dose independent | rect. | 15 | 1 |
| 420 | 86.89 | temperature | 30.0 | 270 | > th | dose independent | rect. | 14 | 19 |
| 443 | 87.10 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 20 | 1 |
| 444 | 87.10 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 20 | 1 |
| 470 | 87.48 | temperature | 30.0 | 270 | < th | dose independent | sin | 15 | NA |
| 473 | 87.56 | temperature | 25.0 | 30 | > th | dose independent | rect. | 17 | 1 |
| 482 | 87.67 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 14 | 6 |
| 506 | 87.80 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 14 | 1 |
| 512 | 87.88 | temperature | 30.0 | 270 | > th | dose independent | sin | 15 | NA |
| 565 | 88.12 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 14 | 7 |
| 658 | 88.63 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 15 | 5 |
| 675 | 88.77 | temperature | 30.0 | 270 | < th | dose independent | no | NA | NA |
| 702 | 88.81 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 18 | 6 |
| 759 | 88.92 | humidity | 50.0 | 270 | < th | dose dependent | no | NA | NA |
| 905 | 89.02 | temperature | 30.0 | 270 | > th | dose independent | rect. | 17 | 23 |
| 910 | 89.06 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 985 | 89.16 | temperature | 30.0 | 270 | > th | dose independent | no | NA | NA |