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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0769200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to LysM-domain GPI-anchored protein 1 precursor. Splice isoform 2.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.86 (0.0368) R2 : 0.524
β1 : -2.61 (0.135) R2dD : 0.414 R2D : 0.292
β2 : -- (--) R2dC : -- R2C : --
β3 : 0.663 (0.0772) R2dE : 0.0761 R2E : 0.0383
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.825 (0.0787) R2dN8 : 0.155 R2N8 : 0.0377
σ : 0.689
deviance : 219.13
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 18.26
memory length : 19
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
201.21 0.666 4.88 -2.64 0.551 0.792 0.258 -0.897 -0.807 20.4 10.31 10 -- --
205.62 0.668 4.86 -2.62 0.516 0.803 0.386 -- -0.767 20.9 10.32 10 -- --
201.31 0.661 4.87 -2.64 0.55 0.794 -- -1 -0.808 20.4 10.44 10 -- --
207.35 0.671 4.88 -2.67 0.545 0.785 -- -- -0.809 20.5 10.44 10 -- --
214.71 0.682 4.86 -2.6 -- 0.632 -- -0.928 -0.836 -- 15.76 16 -- --
228.27 0.708 4.86 -2.59 0.661 -- -0.511 -- -0.814 14.9 -- -- -- --
229.1 0.709 4.86 -2.6 0.662 -- -- -- -0.817 15.1 -- -- -- --
219.13 0.689 4.86 -2.61 -- 0.663 -- -- -0.825 -- 18.26 19 -- --
383.08 0.912 4.8 -- 0.631 0.793 -- -- -0.475 20.2 9.28 8 -- --
254.12 0.745 4.86 -2.63 -- -- -- -- -0.834 -- -- -- -- --
407.09 0.944 4.79 -- 0.714 -- -- -- -0.528 15.1 -- -- -- --
399.94 0.931 4.79 -- -- 0.586 -- -- -0.493 -- 9.3 8 -- --
436.14 0.975 4.8 -- -- -- -- -- -0.543 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 195.85 radiation 1 10 > th dose dependent rect. 13 23
3 197.95 wind 9 14400 < th dose independent rect. 2 11
7 198.53 wind 9 14400 > th dose independent rect. 24 13
9 198.62 radiation 10 10 > th dose independent rect. 13 23
15 199.05 wind 9 14400 > th dose independent rect. 3 10
18 199.21 radiation 10 10 > th dose independent sin 0 NA
19 199.28 humidity 60 1440 > th dose dependent rect. 4 8
21 199.46 wind 9 14400 < th dose independent rect. 5 7
23 199.51 wind 9 14400 > th dose dependent rect. 4 9
27 199.78 wind 9 14400 > th dose dependent rect. 24 13
34 199.96 radiation 10 10 > th dose independent rect. 7 9
37 200.06 wind 9 14400 > th dose independent rect. 5 7
59 200.47 radiation 30 10 < th dose dependent sin 1 NA
61 200.54 atmosphere 1000 270 > th dose independent rect. 12 8
65 200.66 temperature 30 270 < th dose dependent rect. 24 7
72 200.84 humidity 80 1440 > th dose independent rect. 3 9
99 201.18 radiation 30 10 < th dose dependent rect. 5 16
121 201.33 atmosphere 1005 14400 < th dose independent rect. 23 1
124 201.41 radiation 10 10 > th dose independent no NA NA
204 201.46 wind 1 14400 > th dose independent rect. 9 3
222 201.70 humidity 90 10 < th dose dependent rect. 7 9
224 201.71 humidity 90 1440 < th dose dependent rect. 4 8
226 201.74 atmosphere 1000 270 > th dose independent rect. 13 17
227 201.75 wind 1 14400 < th dose dependent rect. 9 2
259 201.80 radiation 30 10 < th dose dependent rect. 13 23
265 201.88 atmosphere 1000 270 > th dose independent rect. 12 19
276 201.98 humidity 70 1440 > th dose independent rect. 10 1
280 202.00 wind 9 14400 < th dose independent sin 6 NA
290 202.11 radiation 30 10 < th dose dependent no NA NA
291 202.13 wind 1 14400 < th dose independent rect. 9 3
293 202.13 radiation 10 270 < th dose dependent rect. 1 17
294 202.13 radiation 30 10 < th dose dependent rect. 15 23
311 202.33 radiation 10 90 > th dose independent sin 2 NA
332 202.40 temperature 10 270 > th dose dependent rect. 18 8
334 202.42 atmosphere 1000 10 > th dose independent rect. 12 10
339 202.45 radiation 30 10 < th dose dependent rect. 9 23
341 202.48 radiation 1 10 > th dose dependent rect. 7 9
346 202.56 wind 9 14400 > th dose dependent rect. 11 2
354 202.62 humidity 90 90 < th dose dependent rect. 7 8
359 202.65 radiation 30 10 < th dose dependent rect. 11 23
362 202.67 atmosphere 995 14400 < th dose independent rect. 14 8
375 202.70 atmosphere 995 14400 > th dose independent rect. 13 9
381 202.76 wind 9 14400 > th dose independent sin 6 NA
385 202.81 radiation 30 10 < th dose dependent rect. 3 18
390 202.84 humidity 90 1440 < th dose dependent rect. 23 13
395 202.91 radiation 1 10 > th dose dependent rect. 7 5
400 203.00 atmosphere 1000 270 > th dose independent rect. 2 16
407 203.04 atmosphere 995 14400 < th dose dependent rect. 14 8
421 203.09 wind 9 14400 > th dose dependent rect. 9 4
426 203.10 radiation 30 10 < th dose dependent rect. 3 23
449 203.18 temperature 25 270 < th dose independent rect. 12 18
459 203.25 atmosphere 1000 10 > th dose independent rect. 16 16
463 203.28 radiation 30 10 < th dose dependent rect. 5 13
485 203.45 wind 9 14400 > th dose independent rect. 9 4
487 203.45 atmosphere 995 14400 > th dose independent rect. 6 15
489 203.45 radiation 30 10 < th dose dependent rect. 23 23
494 203.48 temperature 20 90 > th dose independent rect. 21 15
517 203.52 humidity 70 10 > th dose independent rect. 3 15
532 203.56 atmosphere 995 14400 > th dose independent rect. 6 11
537 203.61 wind 9 14400 < th dose independent rect. 10 2
538 203.61 atmosphere 995 14400 > th dose independent rect. 6 13
539 203.61 radiation 20 30 < th dose independent rect. 3 18
543 203.62 atmosphere 995 14400 < th dose independent rect. 5 14
547 203.63 humidity 90 90 < th dose dependent rect. 22 17
549 203.64 humidity 80 1440 < th dose independent rect. 3 9
561 203.68 temperature 30 270 < th dose dependent rect. 13 18
562 203.68 humidity 90 10 < th dose dependent rect. 22 18
590 203.71 radiation 10 10 > th dose independent rect. 11 23
601 203.75 humidity 50 90 > th dose dependent rect. 3 15
620 203.85 radiation 10 10 < th dose independent rect. 5 16
623 203.86 humidity 70 1440 < th dose independent rect. 9 3
654 204.03 humidity 80 1440 > th dose independent rect. 24 12
665 204.09 atmosphere 995 14400 < th dose independent sin 22 NA
670 204.10 radiation 30 10 < th dose dependent rect. 1 23
678 204.14 wind 9 14400 > th dose dependent sin 6 NA
679 204.14 radiation 1 10 > th dose dependent sin 1 NA
700 204.16 radiation 30 10 < th dose dependent rect. 3 15
703 204.17 temperature 20 90 > th dose independent rect. 21 18
710 204.20 humidity 50 90 > th dose dependent rect. 3 18
741 204.33 temperature 15 270 > th dose independent rect. 6 8
760 204.37 wind 7 4320 > th dose independent rect. 21 1
764 204.39 atmosphere 995 14400 > th dose independent sin 22 NA
766 204.40 humidity 80 1440 < th dose independent rect. 24 12
788 204.55 wind 7 4320 < th dose independent rect. 21 1
793 204.56 wind 7 4320 > th dose dependent rect. 21 1
866 204.71 radiation 10 10 < th dose independent sin 23 NA
878 204.79 atmosphere 1005 14400 > th dose independent rect. 22 2
880 204.79 atmosphere 1000 270 > th dose independent rect. 1 6
881 204.79 humidity 90 14400 > th dose dependent rect. 13 1
900 204.85 temperature 25 270 < th dose independent rect. 23 7
904 204.87 humidity 80 10 < th dose independent rect. 8 8
908 204.88 radiation 10 270 < th dose dependent sin 4 NA
939 204.96 radiation 1 10 > th dose dependent no NA NA
998 204.97 radiation 20 30 < th dose independent rect. 12 22