BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0769200 Os02g0769200|AK106777
         (178 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G21880.2  | chr1:7680689-7682526 FORWARD LENGTH=417            113   6e-26
AT1G77630.1  | chr1:29173726-29175387 FORWARD LENGTH=424          100   7e-22

>AT1G21880.2 | chr1:7680689-7682526 FORWARD LENGTH=417
          Length = 416

 Score =  113 bits (282), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 66/141 (46%), Positives = 80/141 (56%), Gaps = 5/141 (3%)

Query: 14  CLLFCLSLYCTPASLTGSCPSMQCSNSNVLLGNVSARSTSAGCNVSSCSYGGFVNGTITT 73
           C L   +LYC PASL  SC SMQC NSN++LGN++ + TSAGCNV++C Y G  NGTI T
Sbjct: 256 CALGSRNLYCEPASLAVSCSSMQCRNSNLMLGNITVQQTSAGCNVTTCDYNGIANGTILT 315

Query: 74  LLSTGLQSRCPGPHQFPELTEPPTTVNHDSTFLXXXXXXXXXXXXXXXXXXNSGSPSVQG 133
           +L+  LQ RCPGP QF  L  PP TV  D  +                   +S  P    
Sbjct: 316 MLTRSLQPRCPGPQQFAPLLAPPDTVPRDVMYAPAPSPDFDGPGSIASSPRSSMLP---- 371

Query: 134 GSFTLPKVSTANGPAGSVSEA 154
           G   LP  + ANGPAGS+S A
Sbjct: 372 GGGILPG-NPANGPAGSISTA 391



>AT1G77630.1 | chr1:29173726-29175387 FORWARD LENGTH=424
          Length = 423

 Score = 99.8 bits (247), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 46/93 (49%), Positives = 64/93 (68%)

Query: 14  CLLFCLSLYCTPASLTGSCPSMQCSNSNVLLGNVSARSTSAGCNVSSCSYGGFVNGTITT 73
           C+L   S+YC PAS++ SC SM+C NSN +LGN++++ +S+GC +++CSY GF +GTI T
Sbjct: 253 CVLGSRSMYCEPASISVSCSSMRCRNSNFMLGNITSQQSSSGCKLTTCSYNGFASGTILT 312

Query: 74  LLSTGLQSRCPGPHQFPELTEPPTTVNHDSTFL 106
            LS  LQ RCPGP Q   L  PP  V  +  +L
Sbjct: 313 TLSMSLQPRCPGPQQLAPLIAPPDNVPKELMYL 345



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.130    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,593,769
Number of extensions: 129103
Number of successful extensions: 342
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 340
Number of HSP's successfully gapped: 2
Length of query: 178
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 86
Effective length of database: 8,584,297
Effective search space: 738249542
Effective search space used: 738249542
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 108 (46.2 bits)