BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0769200 Os02g0769200|AK106777
(178 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0769200 Similar to LysM-domain GPI-anchored protein 1 ... 288 2e-78
Os06g0208800 Hypothetical protein 135 2e-32
Os09g0452200 Similar to LysM-domain GPI-anchored protein 1 ... 89 2e-18
>Os02g0769200 Similar to LysM-domain GPI-anchored protein 1 precursor. Splice
isoform 2
Length = 178
Score = 288 bits (736), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 148/178 (83%), Positives = 148/178 (83%)
Query: 1 HDIIWNHYLGRNVCLLFCLSLYCTPASLTGSCPSMQCSNSNVLLGNVSARSTSAGCNVSS 60
HDIIWNHYLGRNVCLLFCLSLYCTPASLTGSCPSMQCSNSNVLLGNVSARSTSAGCNVSS
Sbjct: 1 HDIIWNHYLGRNVCLLFCLSLYCTPASLTGSCPSMQCSNSNVLLGNVSARSTSAGCNVSS 60
Query: 61 CSYGGFVNGTITTLLSTGLQSRCPGPHQFPELTEPPTTVNHDSTFLXXXXXXXXXXXXXX 120
CSYGGFVNGTITTLLSTGLQSRCPGPHQFPELTEPPTTVNHDSTFL
Sbjct: 61 CSYGGFVNGTITTLLSTGLQSRCPGPHQFPELTEPPTTVNHDSTFLPPLSAPGPAEAGGA 120
Query: 121 XXXXNSGSPSVQGGSFTLPKVSTANGPAGSVSEAPWMNKPHQXXXXXXXXXXXXYSQM 178
NSGSPSVQGGSFTLPKVSTANGPAGSVSEAPWMNKPHQ YSQM
Sbjct: 121 IPPPNSGSPSVQGGSFTLPKVSTANGPAGSVSEAPWMNKPHQILSSFILCLLLLYSQM 178
>Os06g0208800 Hypothetical protein
Length = 163
Score = 135 bits (340), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/144 (54%), Positives = 88/144 (61%), Gaps = 12/144 (8%)
Query: 19 LSLYCTPASLTGSCPSMQCSNSNVLLGNVSARSTSAGCNVSSCSYGGFVNGTITTLLSTG 78
L LYCTPASLT SC SMQC NSN++LGNV+A+STS GCNVSSCSY G VNGTI T LS+G
Sbjct: 18 LKLYCTPASLTASCSSMQCPNSNLMLGNVTAQSTSGGCNVSSCSYAGLVNGTIATSLSSG 77
Query: 79 LQSRCPGPHQFPELTEPPTTVNHDSTFLXXXXXXXXXXXXXXXXXXNSGSPSVQGGSFTL 138
LQ CPGPHQFP L P VN S P G S
Sbjct: 78 LQPTCPGPHQFPPLRATPIAVNQGSYL--------APSPAPGAGEAGGDIPGFPGSS--- 126
Query: 139 PKVSTANGPAGSVSEAPWMNKPHQ 162
VS ANGP+GSVS+A +N+PHQ
Sbjct: 127 -NVSPANGPSGSVSQAASVNRPHQ 149
>Os09g0452200 Similar to LysM-domain GPI-anchored protein 1 precursor. Splice
isoform 2
Length = 401
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/81 (60%), Positives = 63/81 (77%), Gaps = 1/81 (1%)
Query: 19 LSLYCTPASLTGS-CPSMQCSNSNVLLGNVSARSTSAGCNVSSCSYGGFVNGTITTLLST 77
L L+C PA L S C SMQC+NS+++LGN + TS+GC+V+SCSYGGFVNGTI T L+T
Sbjct: 260 LDLFCVPAPLADSTCSSMQCANSSMMLGNFTLLMTSSGCSVTSCSYGGFVNGTILTTLTT 319
Query: 78 GLQSRCPGPHQFPELTEPPTT 98
L+ +CPGPHQ+P L PPT+
Sbjct: 320 ALKPQCPGPHQYPPLIPPPTS 340
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.130 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,854,688
Number of extensions: 207439
Number of successful extensions: 618
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 616
Number of HSP's successfully gapped: 3
Length of query: 178
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 84
Effective length of database: 12,127,685
Effective search space: 1018725540
Effective search space used: 1018725540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 152 (63.2 bits)