BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0442700 Os09g0442700|J013063M05
         (86 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0442700  SNF2-related domain containing protein              174   1e-44
Os05g0144300  DEAD/DEAH box helicase, N-terminal domain cont...    86   4e-18
Os01g0367900  Similar to Possible global transcription activ...    80   4e-16
Os05g0150300  Similar to Possible global transcription activ...    80   4e-16
Os07g0497000  Similar to Mi-2 autoantigen-like protein (Heli...    64   2e-11

>Os09g0442700 SNF2-related domain containing protein
          Length = 86

 Score =  174 bits (442), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 86/86 (100%), Positives = 86/86 (100%)

Query: 1  LSSFWFSVLVLYLHVYFDGFFQGHRLKNSKCLLLRELKRLPMDNKLLLTGTPLQNNLAEL 60
          LSSFWFSVLVLYLHVYFDGFFQGHRLKNSKCLLLRELKRLPMDNKLLLTGTPLQNNLAEL
Sbjct: 1  LSSFWFSVLVLYLHVYFDGFFQGHRLKNSKCLLLRELKRLPMDNKLLLTGTPLQNNLAEL 60

Query: 61 WSLLNFILPDIFSSHQEFESWYYSFC 86
          WSLLNFILPDIFSSHQEFESWYYSFC
Sbjct: 61 WSLLNFILPDIFSSHQEFESWYYSFC 86



>Os05g0144300 DEAD/DEAH box helicase, N-terminal domain containing protein
          Length = 1128

 Score = 86.3 bits (212), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 39/62 (62%), Positives = 48/62 (77%), Gaps = 1/62 (1%)

Query: 22  QGHRLKNSKCLLLREL-KRLPMDNKLLLTGTPLQNNLAELWSLLNFILPDIFSSHQEFES 80
           +GHRLKN +C L R L  R  +  +LLLTGTP+QN+L ELWSLLNFILP+IF+S Q FE 
Sbjct: 570 EGHRLKNHECALARTLVSRYQIRRRLLLTGTPIQNSLQELWSLLNFILPNIFNSSQNFEE 629

Query: 81  WY 82
           W+
Sbjct: 630 WF 631



>Os01g0367900 Similar to Possible global transcription activator SNF2L1 (SWI/SNF
           related matrix associated actin dependent regulator of
           chromatin subfamily A member 1)
          Length = 1107

 Score = 80.1 bits (196), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/61 (54%), Positives = 46/61 (75%)

Query: 22  QGHRLKNSKCLLLRELKRLPMDNKLLLTGTPLQNNLAELWSLLNFILPDIFSSHQEFESW 81
           + HR+KN   LL + ++    + +LL+TGTPLQNNL ELWSLLNF+LP+IFSS + F+ W
Sbjct: 360 EAHRIKNENSLLSKTMRIYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEW 419

Query: 82  Y 82
           +
Sbjct: 420 F 420



>Os05g0150300 Similar to Possible global transcription activator SNF2L1 (SWI/SNF
           related matrix associated actin dependent regulator of
           chromatin subfamily A member 1)
          Length = 1158

 Score = 80.1 bits (196), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/61 (54%), Positives = 46/61 (75%)

Query: 22  QGHRLKNSKCLLLRELKRLPMDNKLLLTGTPLQNNLAELWSLLNFILPDIFSSHQEFESW 81
           + HR+KN   LL + ++    + +LL+TGTPLQNNL ELWSLLNF+LP+IFSS + F+ W
Sbjct: 414 EAHRIKNENSLLSKTMRIYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDDW 473

Query: 82  Y 82
           +
Sbjct: 474 F 474



>Os07g0497000 Similar to Mi-2 autoantigen-like protein (Helicase-like protein)
          Length = 622

 Score = 64.3 bits (155), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 39/58 (67%)

Query: 22  QGHRLKNSKCLLLRELKRLPMDNKLLLTGTPLQNNLAELWSLLNFILPDIFSSHQEFE 79
           +GHRLKNS   L   L  L   +++LLTGTPLQNN+ E+++LLNF+ P  F S   FE
Sbjct: 116 EGHRLKNSSSKLFSLLNTLSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLASFE 173



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.329    0.143    0.474 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,005,165
Number of extensions: 102755
Number of successful extensions: 228
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 227
Number of HSP's successfully gapped: 5
Length of query: 86
Length of database: 17,035,801
Length adjustment: 56
Effective length of query: 30
Effective length of database: 14,111,817
Effective search space: 423354510
Effective search space used: 423354510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 149 (62.0 bits)