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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0442700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : SNF2-related domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.35 (0.0329) R2 : 0.000321
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0265 (0.0693) R2dN8 : 0.000414 R2N8 : 0.000321
σ : 0.619
deviance : 176.15
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
160.41 0.595 3.32 -0.298 0.0282 0.352 -0.957 0.917 0.0218 21.1 32.1 1246 -- --
160.34 0.59 3.34 -0.416 0.0201 0.473 -1 -- 0.0256 20.7 33.71 1213 -- --
163.36 0.595 3.3 -0.11 0.0471 0.209 -- 2.12 0.00158 22.9 33.38 1234 -- --
163.42 0.595 3.35 -0.397 0.0437 0.463 -- -- -0.00278 22.3 33.72 1193 -- --
163.4 0.595 3.3 -0.0844 -- 0.211 -- 2.25 0.0153 -- 33.6 1198 -- --
170.8 0.613 3.36 -0.325 0.0559 -- -0.916 -- -0.0593 21 -- -- -- --
173.03 0.616 3.36 -0.299 0.117 -- -- -- -0.0615 1.32 -- -- -- --
163.5 0.596 3.34 -0.398 -- 0.479 -- -- 0.0141 -- 33.8 1193 -- --
167.37 0.603 3.33 -- 0.0474 0.481 -- -- 0.0455 22.7 34.34 1143 -- --
173.87 0.616 3.36 -0.294 -- -- -- -- -0.0591 -- -- -- -- --
175.38 0.619 3.35 -- 0.111 -- -- -- -0.0283 1.22 -- -- -- --
167.5 0.603 3.33 -- -- 0.487 -- -- 0.0478 -- 34.32 1143 -- --
176.15 0.619 3.35 -- -- -- -- -- -0.0265 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 155.73 temperature 15.0 30 > th dose independent rect. 5 23
2 156.04 temperature 15.0 30 > th dose independent rect. 19 9
4 157.03 temperature 20.0 30 > th dose dependent rect. 4 5
6 157.21 temperature 15.0 30 > th dose independent rect. 18 23
7 157.23 atmosphere 1000.0 10 < th dose independent rect. 7 1
14 157.23 atmosphere 1000.0 10 < th dose dependent rect. 7 1
35 157.58 temperature 25.0 720 > th dose dependent rect. 21 11
37 157.88 temperature 15.0 270 > th dose independent rect. 5 23
38 157.95 temperature 15.0 1440 > th dose independent rect. 10 6
43 158.31 temperature 15.0 30 > th dose independent rect. 9 19
45 158.37 temperature 15.0 30 > th dose independent rect. 9 23
46 158.38 atmosphere 1010.0 30 < th dose independent rect. 19 9
50 158.44 radiation 30.0 1440 > th dose independent rect. 16 16
58 159.01 temperature 15.0 270 > th dose independent rect. 9 16
60 159.04 temperature 15.0 1440 > th dose independent rect. 6 10
61 159.07 temperature 25.0 720 > th dose dependent rect. 21 1
62 159.12 temperature 15.0 1440 > th dose independent rect. 16 5
63 159.12 temperature 20.0 270 > th dose dependent rect. 4 1
67 159.42 temperature 20.0 10 > th dose dependent rect. 16 17
72 159.52 temperature 20.0 90 > th dose dependent rect. 16 17
75 159.62 temperature 15.0 1440 > th dose independent rect. 16 8
90 159.87 temperature 25.0 720 > th dose independent rect. 21 1
95 159.93 radiation 30.0 1440 > th dose independent rect. 7 1
117 160.05 temperature 15.0 10 > th dose independent rect. 12 16
119 160.06 temperature 15.0 720 > th dose independent rect. 7 16
126 160.12 radiation 30.0 1440 < th dose independent rect. 1 7
127 160.13 temperature 15.0 1440 > th dose independent rect. 16 3
133 160.19 radiation 30.0 1440 < th dose independent rect. 6 2
138 160.26 temperature 25.0 720 > th dose dependent rect. 21 5
139 160.27 precipitation 0.1 720 < th dose independent rect. 9 8
140 160.27 precipitation 0.1 720 < th dose dependent rect. 9 8
151 160.32 temperature 15.0 270 > th dose independent rect. 18 20
163 160.49 temperature 15.0 1440 > th dose independent rect. 10 14
185 160.69 radiation 30.0 1440 < th dose independent rect. 4 4
192 160.71 precipitation 0.1 720 < th dose independent rect. 5 16
193 160.71 precipitation 0.1 720 < th dose dependent rect. 5 16
197 160.73 temperature 15.0 30 > th dose independent rect. 18 14
200 160.75 radiation 30.0 1440 < th dose independent rect. 19 13
201 160.76 temperature 15.0 720 > th dose independent rect. 5 16
202 160.77 temperature 20.0 30 > th dose independent rect. 4 5
207 160.80 temperature 25.0 14400 < th dose independent rect. 4 1
212 160.82 radiation 30.0 1440 < th dose independent rect. 17 15
217 160.85 temperature 25.0 30 > th dose independent rect. 7 1
218 160.85 temperature 30.0 30 < th dose independent rect. 18 10
222 160.88 atmosphere 1010.0 30 < th dose independent rect. 9 19
233 161.00 humidity 70.0 90 < th dose independent rect. 16 3
234 161.02 radiation 30.0 1440 < th dose independent rect. 21 11
246 161.08 temperature 25.0 720 > th dose dependent sin 11 NA
252 161.11 humidity 50.0 720 > th dose independent rect. 9 8
254 161.11 radiation 10.0 1440 > th dose dependent rect. 16 1
259 161.13 temperature 25.0 720 > th dose independent rect. 17 16
264 161.15 humidity 70.0 1440 < th dose dependent rect. 16 1
272 161.20 temperature 20.0 1440 < th dose dependent rect. 16 1
275 161.23 temperature 25.0 14400 > th dose independent rect. 4 1
279 161.25 humidity 70.0 720 > th dose independent rect. 18 2
283 161.26 radiation 10.0 1440 > th dose dependent rect. 16 14
285 161.27 temperature 30.0 1440 > th dose dependent rect. 16 1
322 161.37 temperature 20.0 720 < th dose dependent rect. 11 3
328 161.39 wind 9.0 30 > th dose independent rect. 17 9
351 161.41 temperature 15.0 1440 < th dose independent rect. 23 1
364 161.41 temperature 15.0 1440 < th dose dependent rect. 23 1
381 161.42 temperature 15.0 1440 > th dose independent sin 20 NA
386 161.42 atmosphere 1010.0 30 < th dose dependent rect. 8 1
389 161.43 radiation 10.0 1440 > th dose independent rect. 16 1
398 161.43 temperature 15.0 720 < th dose dependent rect. 1 22
399 161.44 precipitation 0.1 1440 < th dose independent rect. 10 6
401 161.44 temperature 15.0 30 > th dose independent rect. 3 23
402 161.44 precipitation 0.1 1440 < th dose dependent rect. 10 6
403 161.44 temperature 15.0 720 < th dose dependent rect. 2 20
405 161.45 radiation 10.0 43200 > th dose independent rect. 10 1
410 161.46 temperature 15.0 720 < th dose independent sin 0 NA
412 161.46 temperature 15.0 1440 > th dose independent rect. 6 18
434 161.50 humidity 70.0 720 < th dose independent rect. 17 2
440 161.52 temperature 15.0 10 > th dose independent rect. 13 23
442 161.54 atmosphere 1010.0 270 < th dose independent rect. 9 16
444 161.54 temperature 15.0 720 < th dose independent rect. 3 20
447 161.55 temperature 25.0 720 < th dose independent rect. 18 15
452 161.56 temperature 15.0 720 < th dose dependent sin 0 NA
458 161.57 temperature 30.0 1440 > th dose dependent rect. 15 19
475 161.59 wind 9.0 30 > th dose independent rect. 17 5
553 161.65 temperature 15.0 720 > th dose independent sin 17 NA
555 161.65 precipitation 0.1 720 > th dose independent rect. 10 6
559 161.66 temperature 15.0 720 < th dose independent sin 18 NA
575 161.68 temperature 15.0 720 < th dose dependent sin 17 NA
576 161.68 temperature 25.0 10 > th dose dependent rect. 7 1
629 161.72 precipitation 0.1 720 > th dose dependent rect. 10 6
630 161.72 wind 7.0 10 > th dose dependent rect. 17 17
634 161.73 temperature 25.0 720 < th dose independent rect. 18 13
636 161.73 temperature 15.0 1440 < th dose dependent sin 21 NA
646 161.74 humidity 50.0 270 > th dose independent rect. 5 23
671 161.76 wind 9.0 10 > th dose independent rect. 17 3
693 161.78 humidity 70.0 10 > th dose independent rect. 18 10
708 161.80 temperature 15.0 10 > th dose independent sin 7 NA
745 161.80 temperature 15.0 10 > th dose independent sin 1 NA
757 161.80 temperature 15.0 270 > th dose independent sin 6 NA
758 161.80 humidity 90.0 720 > th dose independent rect. 12 1
759 161.80 radiation 1.0 720 < th dose independent rect. 12 1
762 161.80 temperature 25.0 14400 > th dose dependent rect. 24 1
763 161.80 humidity 90.0 720 > th dose dependent rect. 12 1
764 161.80 radiation 1.0 720 < th dose dependent rect. 12 1
766 161.80 wind 7.0 10 > th dose dependent rect. 17 12
777 161.81 humidity 60.0 1440 > th dose independent rect. 16 1
789 161.82 temperature 20.0 270 > th dose independent rect. 4 1
812 161.82 atmosphere 1015.0 30 < th dose dependent rect. 19 9
840 161.84 temperature 15.0 1440 > th dose independent rect. 21 1
857 161.85 temperature 30.0 30 < th dose independent rect. 9 19
906 161.89 atmosphere 1010.0 10 < th dose independent rect. 12 16
932 161.91 precipitation 0.1 1440 < th dose independent rect. 13 3
940 161.91 precipitation 0.1 1440 < th dose dependent rect. 13 3
950 161.92 temperature 20.0 720 < th dose independent rect. 12 3
956 161.92 temperature 15.0 10 > th dose independent rect. 23 23
977 161.93 humidity 90.0 720 > th dose dependent rect. 15 1
987 161.94 humidity 50.0 1440 > th dose independent rect. 13 1
989 161.94 temperature 30.0 30 < th dose independent rect. 12 16
990 161.94 wind 7.0 10 > th dose dependent rect. 17 5